BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485547
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51895.1 | Symbols: SULTR3;1, AST12 | sulfate transporter 3;... 3219 0.0
> AT3G51895.1 | Symbols: SULTR3;1, AST12 | sulfate transporter
3;1 | chr3:19251287-19255760 REVERSE LENGTH=2276
Length=2276
Score = 3219 bits (1743), Expect = 0.0
Identities = 2067/2217 (93%), Gaps = 47/2217 (2%)
Strand=Plus/Plus
Query 1 ATTCCTCACTTCCAACCGCCAAAGGaaaaaaaacaaaaactccaacaaaaaaaaaaaaaa 60
||||||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 1 ATTCCTCACTTCCAACCGCCAAA-GAAAAAAATCAAAAACTCCAAC--------AAAAAA 51
Query 61 aaCTTCCCAAACCCTACCCGAGCGGTCGTCAAATGGGTACGGAGGATTACACATTCCCTC 120
||| ||||||||||||||||||| |||| || ||||| |||||||| |||||||||||||
Sbjct 52 AACCTCCCAAACCCTACCCGAGCAGTCGCCAGATGGGCACGGAGGACTACACATTCCCTC 111
Query 121 AAGGACCGGAGGAGCTGCACCACCGCCACCACCACACGGTGGAGGCTCCACAGCCTCAGC 180
||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||| |
Sbjct 112 AAGGAGCGGAGGAGCT---TCACCGCCGCCACCACACGGTGGAGGCTCCACAACCTCAAC 168
Query 181 CGTTCTTGAAGTCACTTCAGTACTCAGTGAAGGAAACTCTGTTTCCGGACGACCCTTTTA 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 169 CGTTCTTGAAGTCACTTCAGTACTCAGTGAAGGAAACTCTGTTTCCAGACGACCCTTTTA 228
Query 241 GACAATTTAAGAACCAGAATGCATCAAGAAAAGTTGTATTAGGCCTCAAATACTTCCTCC 300
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 229 GACAATTTAAGAACCAAAATGCATCAAGAAAATTTGTGTTAGGCCTCAAATACTTCCTCC 288
Query 301 CGATTGTCGAATGGGCTCCACGCTACAATCTTAAGTTCTTCAAATCAGATCTCATTGCCG 360
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 289 CGATTTTCGAATGGGCACCACGCTACAATCTCAAGTTCTTCAAATCAGATCTCATCGCCG 348
Query 361 GAATCACCATCGCTAGTCTCGCCATCCCTCAGGGCATCAGTTACGCCAAACTCGCCAATT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 349 GAATCACCATCGCTAGTCTCGCCATCCCTCAGGGCATCAGTTACGCCAAACTTGCTAACT 408
Query 421 TGCCCCCAATTCTTGGCCTTTATTCGAGTTTTGTACCGCCATTGGTGTACGCGGTGCTAG 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 409 TGCCCCCAATTCTTGGCCTTTATTCGAGTTTTGTACCGCCATTGGTATACGCGGTGCTAG 468
Query 481 GGAGTTCAAGGGATTTAGCGGTGGGAACGGTTGCGGTTGCGTCTCTTTTGACAGGTGCCA 540
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 469 GGAGTTCAAGGGACTTAGCGGTGGGAACGGTTGCGGTTGCGTCTCTGTTGACAGGTGCGA 528
Query 541 TGCTGAGCAAAGAAGTCGATGCTGAGAAAGATCCTAAGCTTTACCTTCACCTTGCTTTCA 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGCTGAGCAAAGAAGTTGATGCTGAGAAAGATCCTAAGCTTTACCTTCACCTTGCTTTCA 588
Query 601 CAGCCACTTTTTTCGCCGGCGTTTTCGAAGCCTCTCTTGGATTTTTCAGGTTAGGGTTCA 660
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 589 CCGCCACTTTTTTCGCCGGCGTTCTCGAAGCCTCTCTTGGAATTTTCAGGTTAGGGTTCA 648
Query 661 TAGTGGATTTTCTATCGCATGCAACAATAGTAGGATTCATGGGAGGAGCAGCGACGGTGG 720
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 TAGTGGACTTTCTATCGCATGCAACGATAGTAGGATTCATGGGAGGAGCAGCGACGGTGG 708
Query 721 TGAGTCTGCAACAGCTTAAGGGTATTTTCGGACTTAAACATTTCACAGACGCCACTGATG 780
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 709 TGAGTCTGCAACAGCTTAAGGGTATTTTCGGACTTAAACATTTCACAGACTCTACCGATG 768
Query 781 TTATCTCCGTTTTGCGTTCCGTTTTCTCACAAACTCACCAGTGGAGATGGGAGAGTGGCG 840
||||||| || |||||||||||||||| ||||||||| ||||||||||||| |||||||
Sbjct 769 TTATCTCTGTCATGCGTTCCGTTTTCTCCCAAACTCACGAGTGGAGATGGGAAAGTGGCG 828
Query 841 TTCTCGGCTGTGGTTTCCTTTTCTTTCTTCTCTCTACCAGATATTTCAGCA-CGAAGAAA 899
|||| || |||||||| || |||||||||||||| |||||||||||||||| | ||||||
Sbjct 829 TTCTTGGATGTGGTTTTCTATTCTTTCTTCTCTCCACCAGATATTTCAGCATC-AAGAAA 887
Query 900 CCAAAATTCTTTTGGGTGGCGGCGATGGCTCCTTTGACCTCAGTGATTCTTGGAAGTCTC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CCAAAATTCTTTTGGGTGGCGGCGATGGCTCCTTTGACCTCAGTGATTCTTGGAAGTCTC 947
Query 960 TTGGTTTACTTCACTCACGCTGAGAGACATGGTGTTCAAGTGATAGGGGACTTGAAGAAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 948 TTGGTTTACTTCACTCACGCTGAGAGACATGGTGTTCAAGTGATAGGGGACCTGAAGAAA 1007
Query 1020 GGGTTGAATCCACTCTCCGGTTCTGATCTCATCTTTACTTCGCCTTATATGTCGACAGCT 1079
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1008 GGGTTGAATCCACTCTCCGGTTCTGATCTCATCTTTACTTCCCCTTACATGTCCACAGCT 1067
Query 1080 GTTAAGACTGGCCTCATCACTGGCATCATTGCTCTCGCTGAAGGAATAGCTGTGGGGAGG 1139
|| || ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1068 GTCAAAACTGGCCTCATCACTGGCATCATTGCTCTCGCTGAAGGAGTAGCAGTGGGGAGG 1127
Query 1140 AGTTTTGCGATGTTCAAGAACTACAACATAGACGGGAACAAAGAGATGATAGCGTTTGGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AGTTTTGCGATGTTCAAGAACTACAACATAGACGGGAACAAAGAGATGATAGCGTTTGGA 1187
Query 1200 ATGATGAACATCGTTGGGTCCTTCACATCTTGTTACCTCACAACGGGGCCATTTTCAAGG 1259
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1188 ATGATGAACATCGTTGGTTCCTTCACATCTTGTTACCTCACAACCGGACCATTTTCAAGG 1247
Query 1260 TCGGCCGTGAACTACAACGCGGGTTGCAAGACGGCAATGTCCAACATAGTGATGGCGATT 1319
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1248 TCGGCAGTGAACTACAACGCGGGTTGCAAGACCGCAATGTCCAACATAGTGATGGCGATT 1307
Query 1320 GCGGTTATGTTCACACTCCTCTTCCTCACGCCGCTTTTTCACTACACACCACTTGTCGTC 1379
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1308 GCGGTTATGTTCACACTCCTCTTCCTCACACCGCTTTTTCACTACACACCACTCGTCGTC 1367
Query 1380 CTCTCCGCCATCATCATATCCGCAATGCTCGGCCTCATTGACTATCAAGCTGCCATTCAT 1439
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1368 CTCTCTGCCATCATCATATCCGCAATGCTCGGACTCATTGACTATCAAGCTGCCATCCAT 1427
Query 1440 CTCTGGAAAGTCGACAAGTTCGACTTCCTCGTCTGCATGAGCGCCTACGTTGGGGTCGTA 1499
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CTCTGGAAAGTTGACAAGTTCGACTTCCTCGTCTGCATGAGCGCCTACGTTGGGGTCGTA 1487
Query 1500 TTCGGCAGTGTAGAGATTGGACTCATCGTCGCAGTGGCGATATCGATAGCGAGGTTGTTG 1559
|||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||
Sbjct 1488 TTCGGCAGTGTAGAGATTGGACTCGTCGTAGCGGTGGCGATATCTATAGCGAGGTTGTTG 1547
Query 1560 CTGTTTGTGTCGAGGCCAAGAACCGCGGTGAAGGGAAACATACCAAACAGCATGATCTAT 1619
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1548 CTGTTTGTGTCGAGGCCAAAAACTGCGGTGAAGGGAAACATACCAAACAGCATGATCTAT 1607
Query 1620 AGGAACACTGAGCAGTACCCATCCTCAAGAACTGTCCCTGGCATTCTTATCTTGGAGATT 1679
||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct 1608 AGGAACACTGAGCAGTACCCATCATCAAGAACCGTTCCTGGTATTCTCATCTTGGAGATT 1667
Query 1680 GATGCTCCCATCTACTTTGCCAACGCCAGTTACTTACGTGAAAGGATCATAAGGTGGATT 1739
|||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||
Sbjct 1668 GATGCTCCCATCTACTTTGCTAATGCCAGTTACTTGCGTGAAAGAATCATAAGGTGGATT 1727
Query 1740 GATGAAGAGGAAGAGAGAGTCAAACAATCAGGAGAAAGCAGTTTACAATATATTATACTC 1799
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1728 GATGAAGAGGAAGAGAGAGTTAAACAATCAGGAGAGAGCAGCTTACAATATATTATACTC 1787
Query 1800 GATATGTCAGCTGTTGGTAATATCGACACCAGCGGTATAAGCATGATGGAGGAAATTAAG 1859
||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 1788 GATATGTCAGCTGTTGGTAATATCGACACAAGCGGTATTAGCATGATGGTGGAAATTAAG 1847
Query 1860 AAAGTCATCGATC-GAAGAGCGTTAAAGTTGGTATTGGCAAATCCAAAAGGAGAGGTGGT 1918
|||||||| || | | ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1848 AAAGTCATTGA-CAGGAGAGCGTTAAAGTTGGTATTGTCAAATCCAAAAGGAGAGGTCGT 1906
Query 1919 GAAAAAATTAACCAGATCCAAATTCATCGGTGATCATTTGGGCAAAGAGTGGATGTTCTT 1978
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 GAAGAAATTAACCAGATCCAAATTCATCGGTGATCATTTGGGCAAAGAGTGGATGTTCTT 1966
Query 1979 AACAGTAGGAGAAGCTGTGGAGGCTTGTAGCTACATGCTTCACACGTTTAAAACCGAACC 2038
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 AACGGTAGGAGAAGCAGTGGAGGCTTGTAGCTACATGCTTCACACGTTTAAAACCGAACC 2026
Query 2039 GGCCTCCAAAAACGAGCCTTGGAACAACGTATAGTTCGTT-ATTAA---CTA--GTTC-G 2091
||||||||||||||||||||||||||||||||||||| || ||| || |||| |
Sbjct 2027 GGCCTCCAAAAACGAGCCTTGGAACAACGTATAGTTCCTTTATTTTTTGCTGTCGTTCTG 2086
Query 2092 --A-TG-T-G--A--A-CTAA----A-GTaaa---aaa--aa---C-GAAACTCATTTTG 2127
| | | | | | |||| | ||||| ||| || | |||||||||||||
Sbjct 2087 TGACTACTCGTTATTAACTAATCCGATGTAAACTTAAATTAAAAACTGAAACTCATTTTG 2146
Query 2128 TAATATTGATGATGAGTCACATGCAATATATATGTACTCTTATTTTAGTGTTATGGA 2184
|||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct 2147 TAATATTGATGATGAGCCATATGCAATATATATGCACTCTTATTGTAGTGTTATGGA 2203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108332776110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5