BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485582 Length=1419 Score E Sequences producing significant alignments: (Bits) Value AT3G52180.1 | Symbols: ATPTPKIS1, DSP4, SEX4, ATSEX4 | dual spe... 1893 0.0 AT3G52535.1 | Symbols: | other RNA | chr3:19487129-19488556 FO... 121 2e-26 > AT3G52180.1 | Symbols: ATPTPKIS1, DSP4, SEX4, ATSEX4 | dual specificity protein phosphatase (DsPTP1) family protein | chr3:19349652-19353596 REVERSE LENGTH=1509 Length=1509 Score = 1893 bits (1025), Expect = 0.0 Identities = 1308/1434 (91%), Gaps = 62/1434 (4%) Strand=Plus/Plus Query 1 TTTTTGGACATGAATTGAAAAATTATTATAATTACCAGA-TTTTTATGTATCGTCG-A-- 56 ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| | Sbjct 8 TTTTTGGACATGAATTG-AAAATTATTATAATTACCAGATTTTTTATCTATCGTCGAACT 66 Query 57 ----AC--------T---AGCTTCGTTTGCTTCCTCTGATATTTTTGCTACA-------- 93 || | |||||||||||||||||||||||||||| ||||| Sbjct 67 TGGGACTGAGAAAGTAGCAGCTTCGTTTGCTTCCTCTGATATTTTT-CTACACTCTCTGT 125 Query 94 CTCTCTC-AATA-ATGAATTGCCTTCAGAATCTTCCCAGATGTTTGGTCTCACCTCTGCT 151 ||||||| || | |||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 126 CTCTCTCTAA-AGATGAATTGTCTTCAGAATCTTCCCAGATGTTCAGTCTCACCTCTGCT 184 Query 152 GGGATTTGGGTGCAATCACAGAG---A-TC--CTTCTTCTTCTTCTTTGAAGATGCTGGT 205 |||||| ||||||| ||| |||| | || ||||||||||||||||||||||||| | Sbjct 185 GGGATTCGGGTGCATTCAAAGAGATCATTCTTCTTCTTCTTCTTCTTTGAAGATGCTAAT 244 Query 206 ATCACCTCCGATCAAAGCCAATGATCCAAAATCTCGACtttttttACAGGCAGTATCAGA 265 ||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 245 ATCGCCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACATGCAGTATCAGA 304 Query 266 GTCAAAGTCCAGCTCAGAGATGAGTGGTGTTTCAAAAGAGGAAGAGAAATCTGATGAATA 325 |||||| |||||||||||||||||||||||| |||| || |||||||||||||||||||| Sbjct 305 GTCAAAATCCAGCTCAGAGATGAGTGGTGTTGCAAAGGATGAAGAGAAATCTGATGAATA 364 Query 326 TAGCCAAGACATGACTCAAGCTATGGGTGCTGTTTTAACTTACAGGCACGAGTTAGGAAT 385 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 365 TAGCCAAGACATGACTCAAGCTATGGGTGCTGTTCTAACTTACAGGCACGAGTTAGGAAT 424 Query 386 GAACTACAACTTTATTCGTCCAGATTTAATTGTTGGATCCTGCTTACAGACCCCTGAAGA 445 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 425 GAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAGACCCCTGAAGA 484 Query 446 TGTTGACAAGCTTCGTAAAATTGGGGTCAAAACTATATTTTGCTTGCAACAAGATCCAGA 505 |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 485 TGTTGACAAGCTTCGTAAAATTGGAGTTAAAACCATATTTTGCTTGCAACAAGATCCAGA 544 Query 506 CTTGGAATATTTTGGAGTAGACATAAGAAGCATTCAAGCCTATGCTAAGAAATATAGTGA 565 | ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 545 CCTGGAATATTTTGGAGTAGACATAAGCAGCATCCAAGCCTATGCTAAGAAATATAGTGA 604 Query 566 TATTCAGCATATTCGCTGTGAAATCAGAGACTTTGATGCATTTGATTTGAGAATGCGTCT 625 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 605 TATTCAGCATATTCGCTGTGAAATTAGAGACTTTGATGCATTTGATTTGAGAATGCGTCT 664 Query 626 TCCAGCTGTGGTTAGTACACTTTACAAAGCTGTTAAGAGAAATGGAGGAGTTACATATGT 685 |||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 665 TCCAGCCGTGGTTGGTACTCTTTACAAAGCTGTTAAGCGAAATGGAGGAGTTACATATGT 724 Query 686 GCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGTGTTGACATACATGTTCTGGGT 745 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 725 GCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGCGTTGACATACATGTTCTGGGT 784 Query 746 GCAAGGCTATAAACTTATGGAAGCTCATAAATTACTTATGAGCAAAAGGTCATGTTTTCC 805 |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 785 GCAAGGCTATAAGCTTATGGAAGCTCATAAATTACTTATGAGCAAAAGGTCGTGCTTTCC 844 Query 806 GAAGCTGGATGCTATCAGAAATGCTACAATTGATATTCTTACAGGACTGAAGAAGAAGAC 865 |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| Sbjct 845 GAAGCTGGATGCTATCAGAAATGCAACAATTGATATTCTTACAGGACTCAAGAGGAAGAC 904 Query 866 TGTTACTCTGACACTGAAAGACAAGGGATTCTCCTCAGTAGAAATTTCTGGCCTTGACAT 925 ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| Sbjct 905 TGTTACTCTGACACTGAAAGATAAGGGGTTCTCCAGAGTAGAAATTTCTGGCCTTGACAT 964 Query 926 TGGATGGGGACAGAGGATACCTTTAACACTGGACAAAGGAACAGGATTTTGGACCCTAAA 985 |||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||| Sbjct 965 TGGATGGGGACAGAGGATACCTCTAACACTGGACAAGGGAACAGGATTCTGGATCCTAAA 1024 Query 986 GAGAGAACTGCCTGAAGGGCAGTTTGAATATAAATACATCATAGATGGTGAATGGGCACA 1045 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1025 GAGAGAACTGCCTGAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACA 1084 Query 1046 CAATGAGGCTGAACCGTTTATAGGACCTAACAAAGATGGCCATACCAACAATTACACGAA 1105 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | || Sbjct 1085 CAATGAGGCCGAACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAA 1144 Query 1106 AGTAGTGGATGATCCAACGAGTGTGGATGGTGCAACTCGGGAGAGACTATCGAGCGAAGA 1165 ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 1145 AGTAGTGGACGATCCAACAAGTGTGGATGGTACAACTCGGGAGAGACTATCGAGCGAAGA 1204 Query 1166 CCCTGAGCTGTTGGAGGAAGAACGCTCGAAACTAATCCAGTTCTTGGAGACTTGTTCTGA 1225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 CCCTGAGCTGTTGGAGGAAGAACGCTCGAAACTAATCCAGTTCTTGGAGACTTGTTCTGA 1264 Query 1226 GGCAGA-GATTTGAAAGTTGAAAGCATT----TAGACAATGTGAATGTACAACTTACTAC 1280 |||||| | ||||| |||||| ||||| ||||| ||||||||||||||||||||| Sbjct 1265 GGCAGAAG-TTTGAGAGTTGAGAGCATCCGACTAGACTATGTGAATGTACAACTTACTA- 1322 Query 1281 TAGTAACAAGAAAATAAAATGCTTCATGTTGGTAATACATG-AGGTTACGTTTATTATAG 1339 ||||||| |||||||||||||||| ||||||||| || ||||| |||| | | Sbjct 1323 --GTAACAA-----TAAAATGCTTCATGTTAGTAATACATACAG-TTACGCTTAT-A--G 1371 Query 1340 CAGCAA--GAAAATA---TGAAGTTAGTTGTACTATGTTCTAGTATTATATATA 1388 |||||| ||||| | |||||||||| ||||||||||| ||||| ||||||| Sbjct 1372 CAGCAAAAGAAAAAAACATGAAGTTAGTAGTACTATGTTCAAGTATAATATATA 1425 > AT3G52535.1 | Symbols: | other RNA | chr3:19487129-19488556 FORWARD LENGTH=479 Length=479 Score = 121 bits (65), Expect = 2e-26 Identities = 97/111 (87%), Gaps = 8/111 (7%) Strand=Plus/Plus Query 592 GAGACTTTGATGCATTTGATTTGAGAATGCGTCTTCCAG-CTGTGGTTAGTACACTTTAC 650 ||| ||||||||||||||||||||||||||||||||| | | |||||||||||||| | | Sbjct 133 GAGGCTTTGATGCATTTGATTTGAGAATGCGTCTTCCTGAC-GTGGTTAGTACACTGTCC 191 Query 651 AAAGCTGTTAAG-AGAAATGGAGGAGTTACATAT-GTGCAC--TGCACTGC 697 ||||||| |||| | |||||||| |||||||| | |||||| |||||||| Sbjct 192 AAAGCTGCTAAGCA-AAATGGAGAAGTTACAT-TCGTGCACACTGCACTGC 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69929359185 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5