BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485584 Length=2273 Score E Sequences producing significant alignments: (Bits) Value AT3G52200.2 | Symbols: LTA3 | Dihydrolipoamide acetyltransferas... 3201 0.0 > AT3G52200.2 | Symbols: LTA3 | Dihydrolipoamide acetyltransferase, long form protein | chr3:19360206-19366387 FORWARD LENGTH=2549 Length=2549 Score = 3201 bits (1733), Expect = 0.0 Identities = 1871/1937 (97%), Gaps = 12/1937 (1%) Strand=Plus/Plus Query 324 AGGACCCATATCACAGACGGTTCTTGCAATGCCAGCATTGTCTCCTACTATGAGTCATGG 383 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 579 AGGACCCATATCACAGACGGTTCTTGCAATGCCAGCCTTGTCTCCTACTATGAGTCATGG 638 Query 384 AAATGTTGTGAAATGGATGAAGAAAGAAGGTGACAAGGTAGAGGTGGGTGATGTACTATG 443 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 AAATGTTGTAAAATGGATGAAGAAAGAAGGTGACAAGGTAGAGGTGGGTGATGTACTATG 698 Query 444 TGAAATAGAGACAGACAAAGCCACTGTAGAATTTGAGAGTCAAGAGGAAGGATTTCTGGC 503 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699 TGAGATAGAGACAGACAAAGCCACTGTAGAATTTGAGAGTCAAGAGGAAGGATTTCTGGC 758 Query 504 CAAGATTTTAGTCACTGAAGGATCAAAGGATATCCCTGTTAATGAACCGATTGCAATAAT 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 CAAGATTTTAGTCACTGAAGGATCAAAGGATATCCCTGTTAATGAACCGATTGCAATAAT 818 Query 564 GGTTGAGGAGGAAGACGACATTCAAAACGTTCCTGCTACCATAGAGGGTGGACGAGTTGG 623 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 819 GGTTGAGGAGGAAGACGACATTAAAAACGTTCCTGCTACCATAGAGGGTGGACGAGATGG 878 Query 624 TAAAGAGGAAACATCAGCTCAGCAAGAGATGAAACCTGACGAAAGCACACAACAAAAAGG 683 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | Sbjct 879 TAAAGAGGAAACATCAGCTCATCAAGTGATGAAACCTGACGAAAGCACACAACAAAAAAG 938 Query 684 TTCCATTCAGCCCGATACATCAGATCTTCCCCCACATGTCGTCTTAGAAATGCCAGCACT 743 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 939 TTCCATTCAGCCCGATGCATCAGATCTTCCCCCACATGTCGTCTTAGAAATGCCAGCACT 998 Query 744 TTCTCCTACAATGAACCAAGGTAACATTGCCAAATGGTGGAAAAAAGAGGGTGACAAGAT 803 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 999 TTCTCCTACAATGAACCAAGGTAATATTGCCAAATGGTGGAAAAAAGAGGGTGACAAGAT 1058 Query 804 TGAAGTGGGTGATGTCATAGGTGAGATCGAGACTGACAAAGCCACTCTGGAATTTGAAAG 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 TGAAGTGGGTGATGTCATAGGTGAGATCGAGACTGACAAAGCCACTCTGGAATTTGAAAG 1118 Query 864 CCTTGAAGAGGGGTACTTGGCTAAAATTCTAATTCCTGAAGGTTCCAAGGATGTGGCGGT 923 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1119 CCTTGAAGAGGGGTACTTAGCTAAGATTCTAATTCCTGAAGGTTCCAAGGATGTGGCGGT 1178 Query 924 TGGAAAGCCAATTGCCCTTATAGTTGAAGATGCTGAAAGTATTGAAGTCATCAAGTCTTC 983 |||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 1179 GGGAAAGCCGATTGCCCTAATAGTTGAAGATGCTGAAAGTATTGAAGCCATCAAGTCTTC 1238 Query 984 TTCCGCAGGTAGTTCTGAGGTTGAGACAGTTAAAGAAGTCCCTCACAGTGTTGTAGATAA 1043 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 1239 TTCCGCAGGTAGTTCTGAGGTTGATACAGTTAAAGAAGTCCCTGACAGTGTTGTAGATAA 1298 Query 1044 ACCTACAGGGAGGAAAGCAGGCTTCACAAAGATCAGTCCTGCTGCAAAACTATTGATTTT 1103 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1299 ACCTACAGAGAGGAAAGCAGGCTTCACAAAGATCAGTCCTGCTGCAAAGCTATTGATTTT 1358 Query 1104 AGGACATGGATTGGAGGCATCATCAATTGAGGCGTCGGGTCCCTATGGTACATTACTGAA 1163 || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1359 AGAACATGGATTGGAGGCATCATCAATTGAGGCATCGGGTCCCTATGGTACATTATTGAA 1418 Query 1164 ATCAGACGTTGTGGCCGCAATTGCTTCTGGAAAAGTTTCTAAAACATCTGCTTCTACGAA 1223 ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| Sbjct 1419 ATCAGACGTTGTGGCCGCAATTGCTTCTGGAAAAGCTTCTAAATCATCTGCGTCTACGAA 1478 Query 1224 GAAGAAGCAACCGTCAAAGGAGACTCCGTCTAAATCCTCATCCACATCAAAGTCTTCTGT 1283 |||||||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||||| Sbjct 1479 GAAGAAGCAACCATCAAAGGAGACCCCGTCTAAATCCTCCTCCACATCGAAGCCTTCTGT 1538 Query 1284 GACACAGTCAG---ATAATTATGAAGATTTTCCCAATAGTCAAATTCGCAAGATTATAGC 1340 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1539 GACACAGTCAGATAATAATTATGAAGATTTTCCAAATAGTCAAATTCGCAAGATTATAGC 1598 Query 1341 AAAACGTTTATTGGAATCAAAACAGAAGACACCCCATTTGTATTTACAATCAGATGTTGT 1400 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1599 AAAACGTTTATTGGAATCAAAACAGAAGATACCCCATTTGTATTTACAATCAGATGTTGT 1658 Query 1401 ATTGGATCCTCTTCTTGCATTTAGAAAAGAACTTCAAGAAAGCCATGGCGTTAAAGTGTC 1460 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1659 ATTGGATCCTCTTCTTGCATTTAGAAAAGAACTTCAAGAAAACCATGGCGTTAAAGTGTC 1718 Query 1461 TGTCAATGACATAGTTATTAAAGCAGTGGCAGTCGCACTGAGGAATGTACGGCAAGCTAA 1520 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1719 TGTCAATGACATAGTTATTAAAGCAGTGGCAGTCGCACTGAGGAATGTACGACAAGCTAA 1778 Query 1521 TGCTTTCTGGGATGCTGAGAAAGGAGATATCGTTATGTGTGACAGTGTTGACATATCAAT 1580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1779 TGCTTTCTGGGATGCTGAGAAAGGAGATATCGTTATGTGTGACAGTGTTGACATATCAAT 1838 Query 1581 TGCAGTTGCAACTGAGAAGGGCTTAATGACTCCAATTATCAAGAATGCAGACCAGAAATC 1640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1839 TGCAGTTGCAACTGAGAAGGGCTTAATGACTCCAATTATCAAGAATGCAGACCAGAAATC 1898 Query 1641 TATTTCTGCTATTTCCTTAGAGGTTAAGGAGCTGGCACAAAAGGCGCGTTCTGGAAAGCT 1700 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1899 TATTTCTGCTATTTCCTTAGAGGTTAAGGAGCTGGCACAAAAGGCTCGATCTGGAAAGCT 1958 Query 1701 TGCTCCTCATGAGTTTCAAGGAGGGACATTCAGCATATCAAATCTAGGGATGTATCCTGT 1760 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1959 TGCTCCTCATGAGTTTCAAGGAGGGACATTCAGCATATCAAATCTAGGAATGTATCCTGT 2018 Query 1761 GGACCATTTCTGCGCAATCATTAACCCCCCTCAGGCTGGGATTCTAGCAGTTGGTAGAGG 1820 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2019 GGATAATTTCTGCGCAATCATTAACCCCCCTCAGGCTGGGATTCTAGCAGTTGGTAGAGG 2078 Query 1821 AAATAAAGTGGTTGAGCCAGTTATTGGACTAGATGGAATTGAGAAGCCTTCTGTTGTAAC 1880 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2079 AAACAAAGTGGTTGAGCCAGTTATTGGACTAGATGGAATTGAGAAGCCTTCTGTTGTGAC 2138 Query 1881 GAAAATGAATGTAACGTTATCCGCTGATCATCGGATCTTTGATGGACAAGTTGGAGCTTC 1940 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2139 AAAAATGAATGTAACGTTATCCGCTGATCATCGGATCTTTGATGGACAAGTTGGAGCTTC 2198 Query 1941 GTTTATGTCTGAATTGCGTTCAAACTTTGAGGATGTTCGAAGACTTCTTCTGTGAGAAAG 2000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2199 GTTTATGTCTGAATTGCGTTCAAACTTTGAGGATGTTCGAAGACTTCTTCTGTGAGAAAG 2258 Query 2001 ATCCAAGTGTTTATCAAATGAATCTTGGATTACTACATAATAAACCTCGGACCAACCCAC 2060 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2259 ATCCAACTGTTTACCAAATGAATCTTGGATTACTACATAATAAACCTCGGACCAACCCAC 2318 Query 2061 GTGCACATCCAGAACCAGAAAGAACTGCTGGTCTACAGGGTTAACTCTGATCACATGTTT 2120 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 2319 GTGCACATCCAGAACCAGAA----CTGCTGGTCTACATTGTTAACTCTGATCACATGTTT 2374 Query 2121 CAtttttttCCATTTGGTTCATACT-CT-ACCAAAATTTGTTTTGGTCTT-AT-AATTCG 2176 ||||||||||||||||||||||| | || ||||||||||||||||||||| | |||||| Sbjct 2375 CATTTTTTTCCATTTGGTTCATA-TACTTACCAAAATTTGTTTTGGTCTTTAACAATTCG 2433 Query 2177 TCTTATAGATTGGTAACTTCATGAGGTATTTTTTGTTTGCTCTGTCTTCCGCAAAATAAA 2236 |||||||||||||||||||| ||||||||||||||| || |||||| || |||||||||| Sbjct 2434 TCTTATAGATTGGTAACTTCCTGAGGTATTTTTTGTCTGGTCTGTCCTCTGCAAAATAAA 2493 Query 2237 TAAATTCAGCTGTCAAT 2253 ||| ||||||||||||| Sbjct 2494 TAATTTCAGCTGTCAAT 2510 Score = 473 bits (256), Expect = 3e-132 Identities = 305/327 (93%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 1 AAAGTGTTACGATTCGATATCATCATCGTCTCTCTCTCCCATTTGTGATTTTCTCAAACC 60 |||||||||||||||| | ||||||| ||||||| ||||||||||||| ||||||| Sbjct 33 AAAGTGTTACGATTCG--GT-ATCATCG--TCTCTCT--CATTTGTGATTTTGTCAAACC 85 Query 61 CT-C-CTCTTTTCTCGAAGAGCTCTCATGGTGCTTCCGCTCTTCCGGCGCGCTGCGATCG 118 || | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 86 CTGCTCTCTTTTCTCCAAGTGCTCTCATGGTGCTTCCGCTCTTCCGGCGCGCTGCGATCG 145 Query 119 CCCGGACTTCCTCGCTTCTCAGAGCTCGTCTTTTTGTTCCTGCCTCCGGATTCCATTCTC 178 |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 146 CCCGGACTTCCTCGCTTCTCAGAGCTCGTCTTTTCGCTCCTGCCTCCGAATTCCATTCTC 205 Query 179 GCTTTTCCAATGGACTATACCACTTGGACGACAAGATTCGTAGCAGTAATGGTGTGAGGT 238 ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 206 GCTTTTCTAATGGACTATACCACTTGGACGACAAAATTAGTAGCAGTAATGGTGTGAGGT 265 Query 239 CTGCCTCTATAGACATGATTACAAGAATGGATGATAGTCCTCCAAAGCCCATTTTGCGAT 298 |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 266 CTGCCTCTATAGACTTGATTACAAGAATGGATGATAGTTCTCCAAAGCCCATTCTGCGAT 325 Query 299 TTGGCGTGCAAAACTTTTCATCTACAG 325 ||||||||||||||||||||||||||| Sbjct 326 TTGGCGTGCAAAACTTTTCATCTACAG 352 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112800624615 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5