BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485604
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52370.1 | Symbols: FLA15 | FASCICLIN-like arabinogalactan p... 2292 0.0
> AT3G52370.1 | Symbols: FLA15 | FASCICLIN-like arabinogalactan
protein 15 precursor | chr3:19417490-19419782 FORWARD LENGTH=1603
Length=1603
Score = 2292 bits (1241), Expect = 0.0
Identities = 1375/1439 (96%), Gaps = 12/1439 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaCTCAAAACCATTCTTCATTTCACCGACACTTTCTTCT------CCACCATGGA 54
||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 5 AAATAAACTCAAAACCATTCTTCATTTCGCCGACACTTTCTTCTCCACCACCACCATGGA 64
Query 55 TGATCTCTCCAAGCTTCTCTTCTTCCTCCTCCTCACTA---CCATTACAACCGCATTACC 111
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 65 TGATCTCTCCAAGCTTCTCTTCTTCCTCCTCCTCACTATCTCCATTACCACCGCATTACC 124
Query 112 CGATAAACCCGGGTCGGGTCAAATAAACTCCAACTCTGTCCTCGTTGCTCTTCTTGACTC 171
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 125 CGATAAACCCGGGTCGGGTCAAATAAACTCAAACTCCGTCCTCGTTGCTCTTCTTGACTC 184
Query 172 ACACTACACAGAACTAGCAGAACTTGTAGAGAAAGCTCTTCTTCTCCAAACCTTAGAAGA 231
||||||||||||||||||||| || || || |||||||||||||||||||||||||||||
Sbjct 185 ACACTACACAGAACTAGCAGAGCTCGTCGAAAAAGCTCTTCTTCTCCAAACCTTAGAAGA 244
Query 232 AGCTGTTGGTCAACACAACATCACAATCTTTGCTCCTCGTAACGATGCCTTAGaaaaaaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGCTGTTGGTCAACACAACATCACAATCTTTGCTCCTCGTAACGATGCCTTAGAAAAAAA 304
Query 292 TCTTGATCCTGAATTCAAATCTTTCTTGCTCCAACCAAAAAACCTCAAATCATTACAATC 351
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 305 TCTTGATCCTGAATTCAAATCTTTCTTACTCCAACCGAAAAACCTCAAATCATTACAATC 364
Query 352 TTTATTAATGTTTCACATTCTTCCCAAAAGAATCACTTCTCCTCAATTTTCCTCCGCCGT 411
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 365 TTTATTAATGTTTCACATTCTTCCCAAAAGAATCACTTCTCCACAATTCTCCTCCGCCGT 424
Query 412 CGTTAGCCACCGTACTCTCTCCAACCACCACCTCCACTTCACCAACGGAAAAGTCAACTC 471
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 425 CGTTAGCCACCGTACTCTCTCCAACGACCACCTCCATTTCACCAACGGAAAAGTCAACTC 484
Query 472 CGCTGAGATTACCAAACCCGATGATTTAACCCGACCCGACGGAATCATCCATGGAATCGA 531
|||||| || |||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 485 CGCTGAAATAACCAAACCCGATGATTTAACTCGTCCCGATGGAATCATCCACGGAATCGA 544
Query 532 ACGTCTTTTAATCCCACGTTCTGTTCAAGAGGATTTCAACCGCCGTCGTAGTCTCCGTTC 591
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 545 ACGTCTTTTAATCCCACGTTCTGTTCAAGAAGATTTCAACCGCCGTCGTAGTCTCCGTTC 604
Query 592 AATCGCCGCCGTGTTACCGGAAGGAGCACCGGAGGTTGATCCAAGAACTCACCGTCTCAA 651
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AATCGCTGCCGTATTACCGGAAGGAGCACCGGAGGTTGATCCAAGAACTCACCGTCTCAA 664
Query 652 GAAAATGCCAGCACCAATTCCCGCCGGAGCTCCACCGGTTCTCCCGGTTTACGACGCAAT 711
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 665 GAAAAAGCCAGCACCAATTCCCGCCGGAGCTCCACCGGTTCTTCCGGTTTACGACGCAAT 724
Query 712 GTCACCCGGTCCGTCACTAGCTCCGGCTCCGGCACCGGGACCGGGTGGGCCTCGTCACCA 771
|||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 725 GTCACCTGGTCCGTCACTAGCTCCGGCTCCGGCACCAGGACCGGGTGGGCCACGCCACCA 784
Query 772 TTTCAACGGAGAGGCTCAAGTTAAAGATTTCATCCACACGCTTCTTCATTACGGTGGCTA 831
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 785 TTTCAACGGAGAGGCTCAAGTTAAAGATTTTATCCACACGCTTCTTCATTACGGTGGCTA 844
Query 832 CAATGAAATGGCAGACATTCTCGTTAATCTCACTTCTCTAGCCACAGAGATGGGTCGGCT 891
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 845 CAATGAAATGGCAGATATTCTCGTTAATCTCACTTCTTTAGCCACCGAGATGGGTCGGCT 904
Query 892 CGTGTCGGAAGGTTACGTTTTAACCGTTTTAGCTCCAAACGACGAAGCTATGGCTAAGTT 951
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 905 CGTGTCGGAAGGTTACGTTTTAACCGTTTTAGCACCAAACGACGAAGCTATGGCTAAATT 964
Query 952 GACCACGGACCAATTGAGCGAACCGGGAGCTCCAGAGCAAATTGTGTATTACCACATCAT 1011
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 965 GACCACGGACCAATTGAGCGAACCGGGAGCTCCAGAGCAAATTATGTATTATCACATCAT 1024
Query 1012 ACCGGAATACCAAACCGAAGAGAGTATGTACAATTCTGTACGCCGGTTTGGGAAAGTCCG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1025 ACCGGAATACCAAACCGAAGAGAGTATGTACAATTCTGTACGCCGGTTTGGGAAAATCCG 1084
Query 1072 GTATGATTCACTACGGTTTCCTCATAAAGTAGAGGCTCAGGAGGCAGATGGTTCGGTTAA 1131
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GTACGATTCACTCCGGTTTCCTCATAAAGTAGAGGCTCAGGAGGCAGATGGTTCGGTTAA 1144
Query 1132 GTTCGGTCATGGTGATGGTTCGGCTTATTTGTTCGATCCTGATATTTATACGGATGGACG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1145 GTTCGGTCATGGTGATGGTTCGGCTTATTTGTTCGATCCTGATATTTATACCGATGGACG 1204
Query 1192 GATTTCGGTTCAAGGGATTGACGGAGTTTTGTTTCCGGAGGAAAAAACTCCGGTCGAGAA 1251
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1205 GATTTCGGTTCAAGGGATTGACGGTGTTTTGTTCCCGGAGGAAAAAACTCCGGTCGAGAA 1264
Query 1252 GAAAACCGCCGCTCCAGTCGTCAAGAAAGCCGCC-AAACCAAGAAGAGGTAAATTGATGG 1310
|||||||| || |||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1265 GAAAACCGGCGTTCCAGTTGTCAAGAAAGCA-CCTAAACCAAGAAGAGGTAAATTGATGG 1323
Query 1311 AAGTAGCATGTACAATGCTGGGATCACAATTTTCAACATGTCAATGAGATCAAATTAAAT 1370
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1324 AAGTAGCATGTACAATGCTGGGATCACAATTTCCAACATGTCAATGAGATCAAATTAAAT 1383
Query 1371 CCAG-ACATGAGAATTTTATAATTCTGTAAACATGTGATAAAATTGTGAACAGAACAAA 1428
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1384 CCGGGACATGAGAATTTTATAATTCTGTAAACATGTGATAAAAATGTGAACAGAAAAAA 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5