BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485617
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52500.1 | Symbols: | Eukaryotic aspartyl protease family p... 2283 0.0
> AT3G52500.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:19465499-19467386 REVERSE LENGTH=1888
Length=1888
Score = 2283 bits (1236), Expect = 0.0
Identities = 1450/1555 (93%), Gaps = 7/1555 (0%)
Strand=Plus/Plus
Query 108 TAATAATGAAGAAGAAAGTCACAGAGATCGAACATGAttctccactttccacttctttgt 167
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TAA-AAGGAAGAAGAAAGTCACAGAGATCGAACATGATTCTCCACTTTCCACTTCTTTGT 270
Query 168 cttctttcttctccttctcacttacttAAGCCATAAGCCATCAAACCCAAAAACACCACA 227
||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 271 CTTCTTTCTTCTCCTTCTCACTTACTTAACCCATAAGCCATCAATCCCAAACACACCATT 330
Query 228 ACTATGGcttcttctttcttcttcttcttccttatcttcCTCTCCGTCGTCTCCGCCGTC 287
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 ACAATGGCTTCTTCTATCTTCTTCTTCTTCCTTATCTTCCTCTCCGTCGTCTCCGCCGTC 390
Query 288 AAATTACCTCTTTCTCCCTTCTCCCACTCCGACCAATCACCTAAAGATCCTTACCTCTCT 347
||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 391 AAACTACCTCTCTCTCCCTTCTCCCACTCCGACCAATCACCAAAAGACCCTTACCTCTCT 450
Query 348 CTCCGTCGTCTCGCTGAATCCTCAATCGCCAGAGCTCATAAACTCAAACACGGCACTTCC 407
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 451 CTCCGTCGTCTCGCTGAATCCTCAATCGCTAGAGCTCATAAACTCAAACACGGCACCTCA 510
Query 408 ATCAAACCCGACGAAGAAGCTCTCTCCTCCAC-AGCCACCACATCCGCCACCGTCGTGAA 466
|| |||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||
Sbjct 511 ATAAAACCCGACGAAGATGCTCTCTCCTCCACCA-CCACCGCATCCGCCACCGTCGTGAA 569
Query 467 ATCTCCTCTTTCACCTAAAAGCTACGGTGGATACTCAGTCTCTCTCAGCTTCGGCACACC 526
||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 570 ATCTCCTCTCTCTGCTAAAAGCTACGGCGGATACTCAGTCTCTCTCAGCTTCGGCACACC 629
Query 527 GTCGCAAACAATCCCATTCGTTTTCGATACCGGAAGCAGTCTCGTCTGGTTCCCATGTAC 586
||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||
Sbjct 630 GTCGCAAACAATCCCATTCGTTTTCGATACCGGAAGCAGTCTCGTTTGGCTACCTTGTAC 689
Query 587 CTCGAGATATCTCTGCTCCGATTGCAATTTCTCCGGTTTGGATCCGACTCAAATCCCTAG 646
||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 690 CTCAAGATATCTCTGCTCCGGTTGCGATTTCTCCGGTTTGGATCCGACTCTAATCCCTAG 749
Query 647 ATTTATCCCCAAGAACTCTTCCTCTTCCCGGGTTATCGGGTGTCAGAATCCGAAATGTCA 706
||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||
Sbjct 750 ATTTATCCCCAAGAACTCTTCCTCTTCGAAGATTATCGGGTGTCAGAGTCCAAAATGTCA 809
Query 707 GTTTCTATTCGGAGCCAATGTCCAATGCAGAGGATGTGACCCGAATACCCGAAATTGCAC 766
|||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 810 GTTTCTATACGGACCCAATGTTCAATGCAGAGGATGTGACCCGAATACCCGAAACTGCAC 869
Query 767 CGTCTCTTGTCCACCGTACATTCTTCAATACGGATTAGGATCGACGGCTGGGATTTTATT 826
|||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct 870 CGTCGGTTGTCCACCGTACATTCTTCAATACGGATTAGGATCAACGGCTGGGGTTTTAAT 929
Query 827 ATCCGAAAAGCTTGATTTCCCGGATCTAACAGTACCCGATTTCGTTGTCGGATGTTCAAT 886
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 930 AACCGAAAAGCTTGATTTCCCGGATCTAACCGTACCCGATTTCGTAGTCGGATGTTCAAT 989
Query 887 TATCTCCACCCGAAAACCCGCTGGTATCGCCGGGTTTGGGCGAGGATCCGAATCGCTTCC 946
||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 990 TATCTCCACCCGACAACCCGCTGGTATCGCTGGGTTTGGGCGAGGACCCGTATCGCTTCC 1049
Query 947 TTCACAAATGAAGCTTAAGAAATTTTCTCACTGTTTGGTTTCTCGTCGGTTCGACGATAC 1006
|||||||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 1050 TTCACAAATGAATCTCAAGAGATTCTCTCACTGTTTGGTTTCTCGTCGGTTTGACGATAC 1109
Query 1007 CAACGTCACTACCGATCTTGATTTAGATACCGGGTCGGGTCATAAATCCGGTTCGAAAAC 1066
|||||| || ||||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 1110 CAACGTAACCACCGATCTTGATTTAGATACCGGATCGGGTCATAATTCCGGGTCTAAAAC 1169
Query 1067 TCCGGGTCTCACCTACACGCCGTTTCGGAAAAATCCCAATGTCTCCAACACAGCTTTTCT 1126
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1170 TCCGGGTCTCACATACACGCCGTTTCGGAAAAATCCCAATGTCTCCAACAAAGCTTTTCT 1229
Query 1127 CCAGTATTATTACCTCAATCTCCGGCGAATCTACGTCGGAAGCAAGCACGTGAAGATTCC 1186
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1230 CGAGTATTATTACCTCAATCTCCGGCGAATCTACGTCGGAAGAAAGCACGTGAAGATTCC 1289
Query 1187 GTACAAGTTTCTCGCTCCGGGAACTAACGGAAACGGAGGATCCATCGTTGATTCCGGATC 1246
||| |||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1290 GTATAAGTATCTCGCGCCGGGAACTAACGGAGACGGAGGATCCATTGTTGATTCCGGATC 1349
Query 1247 TACATTCACATTCATGGAGCGACCCGTTTTCGAGCTAGTAGCTGAAGAATTCGCGACACA 1306
||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1350 TACATTCACTTTCATGGAGCGACCCGTTTTCGAGCTCGTTGCTGAAGAATTCGCTTCACA 1409
Query 1307 GATGTCGAATTACACTCGTGAGAAAGACTTAGAGAAG-ATCTCCGGAATTGCACCGTGTT 1365
||||||||| |||||||||||||||||||| |||||| | | ||| ||| ||||||||
Sbjct 1410 GATGTCGAACTACACTCGTGAGAAAGACTTGGAGAAGGAAA-CAGGACTTGGACCGTGTT 1468
Query 1366 TTAATATCTCCGGCAAGGGAGATGTGACGGTGCCGGAGCTGATTTTTGAGTTTAAAGGTG 1425
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 TTAATATCTCCGGGAAGGGAGATGTGACGGTGCCGGAGCTGATTTTTGAGTTTAAAGGTG 1528
Query 1426 GAGCGAAAATGGAATTGCCGTTATCGAATTACTTCTCGTTCGTTGGGAATGCTGATACTG 1485
||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||||| |
Sbjct 1529 GAGCGAAGTTGGAATTGCCGTTATCCAATTACTTCACGTTCGTTGGGAATACTGATACCG 1588
Query 1486 TTTGTCTCACGGTGGTTTCCGATAACACCGTTAATCCCGGCGGCGGGACTGGTCCGGCGA 1545
||||||| ||||||||||| ||||| |||||||||||| |||||||||||| |||||||
Sbjct 1589 TTTGTCTTACGGTGGTTTCGGATAAAACCGTTAATCCCTCCGGCGGGACTGGACCGGCGA 1648
Query 1546 TAATTCTGGGAAGTTTCCAGCAACAGAACTATTTAGTTGAATACGATTTGGAGAATGACA 1605
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 TAATTCTGGGGAGTTTCCAGCAACAGAACTATTTAGTTGAATACGATTTGGAGAATGACA 1708
Query 1606 GGTTTGGGTTCGCGAAGGAA-AAGTGTAGCCCGTGAGTTTTCAGGGGTAAATTTG 1659
||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1709 GGTTTGGGTTCGCGAAG-AAGAAGTGTAGCCCGTGAGTTTTCAGGGGTAAATTTG 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5