BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485637 Length=1642 Score E Sequences producing significant alignments: (Bits) Value AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2538 0.0 AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 501 8e-141 AT5G28330.1 | Symbols: | pseudogene, RNA recognition motif (RR... 355 7e-97 > AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19521660-19524906 FORWARD LENGTH=1785 Length=1785 Score = 2538 bits (1374), Expect = 0.0 Identities = 1520/1589 (96%), Gaps = 15/1589 (1%) Strand=Plus/Plus Query 41 TTTCAACACCTGAGCTGCGCGAATAAACAAACACTTGTTCATCCTCTCCGTAATTCTCAA 100 |||||||||||||| |||||| | | | | |||||| ||||||||||||||||||||||| Sbjct 76 TTTCAACACCTGAGGTGCGCG-A-AGATAGACACTTCTTCATCCTCTCCGTAATTCTCAA 133 Query 101 AATTAGGGTTTTCTTCCGGCAGCTCTCTCAGTTGT-CTTGCAAGCGTTCTTTTCTAGATA 159 ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| Sbjct 134 AATTAGGGTTTTCTTCCGGCAGCTCTCTCAGTTGTAC-TGCAAGCATTCTTTTCTAGATA 192 Query 160 CTTAAGATGTCAAGGACGAGGACTGCTGCTTCTGAGGCTCACGATTCAATGGAGTCTGAG 219 |||||||||||||||||||||||||||||||||||||||| || || ||||| |||||| Sbjct 193 TTTAAGATGTCAAGGACGAGGACTGCTGCTTCTGAGGCTCATGACTCCATGGAATCTGAG 252 Query 220 GAAAGGGTAGACCTTGACGGTGACAATGATCCTGAGGAGATTCTggaggaggaagttgaa 279 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 253 GAAAGGGTAGACCTTGATGGTGACAATGATCCTGAGGAGATTCTGGAGGAGGAAGTTGAA 312 Query 280 tatgaagaagtagaagaggaggaggaaattgaagagatagaagaggagatagaggaggag 339 || |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 313 TACGAAGAAGTTGAAGAGGAGGA-G--ATTGAAGAGATAGAAGAGGAGATAGAGGAGGAG 369 Query 340 gtggaagt-g--gaaga--a-gaggaggaggatgctgttgcaacggaagaggaagaagaa 393 || ||||| | ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 370 GTTGAAGTGGAAGAAGAGGAGGAGGAGGAGGATGCTGTTGCAACGGAAGAGGAAGAAGAA 429 Query 394 AAGAAAAGGCATGTTGAACTCCTTGCACTTCCTCCACATGGTTCAGAGGTTTATCTTGGA 453 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 430 AAGAAAAGGCATGTTGAACTTCTTGCACTTCCTCCACATGGTTCAGAGGTTTATCTTGGA 489 Query 454 GGGATTCCTACTGATGCTACTGAAGGGGACTTAAAGAGCTTCTGTCAATCAATAGGAGAA 513 |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| Sbjct 490 GGGATTCCTACTGATGCTACTGAAGGGGACTTAAAGGGCTTCTGTGGATCTATAGGAGAA 549 Query 514 GTTACTGAGGTTAGGATAATGAGGGAAAAGGAATCTGGTGATGGAAAGGGGTATGCATTT 573 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 550 GTTACTGAGGTTAGGATAATGAGGGAAAAGGATTCTGGTGATGGAAAGGGGTATGCATTT 609 Query 574 GTGACATTCAGAAACAAGGACTTAGCAGCTGAAGCAATCGATACTCTAAATAGCACTGAA 633 || |||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| Sbjct 610 GTAACATTCAGAAGTAAGGACTTAGCTGCTGAAGCAATTGATACTCTAAATAACACTGAC 669 Query 634 TTCAGAGGTAAAAGGATAAAATGTTCGACTACCCAAGCAAAGCATCGTCTCTTTCTTGGC 693 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 TTCAGAGGTAAAAGGATAAAATGTTCGACTACCCAAGCAAAGCATCGTCTCTTTCTTGGT 729 Query 694 AATGTTCCTAGAAATTGGACT-GAGTCAGACATTAAGAAAGCAGCGAATAAAATTGGTCC 752 ||||| ||||||||||||| | ||||||||||||||||||||||| |||| ||||||||| Sbjct 730 AATGTCCCTAGAAATTGGA-TGGAGTCAGACATTAAGAAAGCAGCAAATAGAATTGGTCC 788 Query 753 AGGCGTTCAAATTGTCGAACTCCCAAAGGAACCACAAAATATGGGCCGGAATCGTGGATT 812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 AGGCGTTCAAATTGTCGAACTCCCAAAGGAACCACAAAATATGGGCCGGAATCGTGGATT 848 Query 813 TGCTTTCATCGAGTATTACAACCATGCATGTGCTGAATACTCGAAACAAAAAATGTCAAA 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 TGCTTTCATCGAGTATTACAACCATGCATGTGCTGAATACTCGAAACAAAAAATGTCAAA 908 Query 873 TCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCAAGGAGTGG 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 TCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCAAGGAGTGG 968 Query 933 AGGAGGAGGAGACTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAACTTGCCTAG 992 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 969 AGGAGGAGGAGATTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAACTTACCTAG 1028 Query 993 AGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATACTGAAAGT 1052 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 AGATATAACACAAGAGCGTCTAAAGGCATTATTTGAACATCACGGGAAAATACTGAAAGT 1088 Query 1053 GGTGATTCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTGCACTATGC 1112 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1089 GGTGATCCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTGCATTATGC 1148 Query 1113 AGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATTGATGGTCA 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149 AGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATTGATGGTCA 1208 Query 1173 TATGTTGGATTGTACTCTGGCAAAGCCTCAAGCGGATCAAAAGGCGAATACAAATACAGT 1232 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1209 TATGTTGGATTGTACTCTGGCAAAGCCTCAAGCTGATCAAAAGACGAATACAAATACAGT 1268 Query 1233 TCAGAATGTGCAGAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCAT 1292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 TCAGAATGTGCAGAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCAT 1328 Query 1293 GGCTCCTAGTCCCTTTGGTGCTCTTGGTGGATTTGGAGCTTCTGCCTACTCACAACCATT 1352 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1329 GGCTCCTAGTCCCTTTGGTGCTCTCGGTGGATTTGGAGCTTCTGCCTACTCACAACCATT 1388 Query 1353 AATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATAATGTTACCCGA 1412 ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1389 AATGCATGCCGGAGGTCACGCAGCCGGTGGAATGTCGATGATGCCAATCATGTTACCCGA 1448 Query 1413 TGGAAGAATCGGATACGTCTTGCAACAGCCTGGACTAGCAGCTATGCCACAACCACCACC 1472 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1449 TGGGAGAATCGGATACGTCTTGCAACAGCCTGGACTAGCAGCTATGCCGCAACCACCACC 1508 Query 1473 AAGGCCTTCTCCACCATATAGGGGAGGCAGCGGTTCGagcagcagcagcagcagcaAACG 1532 ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1509 AAGGCATTCTCCACCGTATAGGGGAGGCAGCGGTTCGAGCAGCAGCAGCGGCAGCAAACG 1568 Query 1533 AAGTAGCGACAATGGTAGAGGACGAAGCCGTTACAATCCTTATTAGTAATTTAATAATTC 1592 |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1569 AAGTAGTGACAACGGTAGAGGACGAAGCCGTTACAATCCTTATTAGTAATTTCATAATTA 1628 Query 1593 TGTCTTCTTTATTTGGAAAAACACCCCAA 1621 ||| ||||||||| ||||||||||||||| Sbjct 1629 TGTTTTCTTTATTGGGAAAAACACCCCAA 1657 Score = 63.9 bits (34), Expect = 5e-09 Identities = 37/38 (97%), Gaps = 1/38 (3%) Strand=Plus/Plus Query 1 AGTCTCGCTTAGGCATCTTTTAGGTCATATCA-TACAA 37 |||||||||||||||||||||||||||||||| ||||| Sbjct 20 AGTCTCGCTTAGGCATCTTTTAGGTCATATCAATACAA 57 > AT5G28390.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:10342024-10342997 REVERSE LENGTH=543 Length=543 Score = 501 bits (271), Expect = 8e-141 Identities = 293/304 (96%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 865 ATGTCAAATCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 924 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCAAATCCGAGTTTCAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 60 Query 925 AGGAGTGGAGGAGGAGGAGACTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAAC 984 ||||||||||||| |||||||||||| || || |||||||||||||||||||||||||| Sbjct 61 AGGAGTGGAGGAGAAGGAGACTCTTCTGCCTCTCAGGTCAAGGCATTGTACATCAAGAAT 120 Query 985 TTGCCTAGAGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATA 1044 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTACCTAGAGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATA 180 Query 1045 CTGAAAGTGGTGATTCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTG 1104 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTGAAAGTGGTGATCCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTG 240 Query 1105 CACTATGCAGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATT 1164 ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 241 CACTACGCAGAGAGGACAAGCGTAATGCGAGCTTTGAAAAACACTGAAAGATATGAGATT 300 Query 1165 GATG 1168 |||| Sbjct 301 GATG 304 Score = 351 bits (190), Expect = 9e-96 Identities = 231/249 (93%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 1330 GCTTCTGCCTACTCACAACCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCG 1389 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 GCTTCTGCCTATTCACAACCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCG 363 Query 1390 ATGATGCCAATAATGTTACCCGATGGAAGAATCGGATACGTCTTGCAACAGCCTGGACTA 1449 ||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 364 ATGATGCCAATCATGTTACCTGATGGAAGGATCCGATACGTCTTGCAACAGCCTGGACTA 423 Query 1450 GCAGCTATGCCACAACCACCACCAAGGCCTTCTCCACCATATAGGGGAGGCAGCGGTTCG 1509 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 424 GCAGCGATGCCACAACCACCACCGAGGCCTTCTCCACCGTATAGGGGAGGCAGCGGTTCG 483 Query 1510 agcagcagcagcagcagcaAACGAAGTAGCGACAATGGTAGAGGACGAAGCCGTTACAAT 1569 ||||| |||| | | |||| | |||||||||||||||||||||||||||||||||| Sbjct 484 AGCAGTAGCA--A--A-CAAA-G---TAGCGACAATGGTAGAGGACGAAGCCGTTACAAT 534 Query 1570 CCTTATTAG 1578 ||||||||| Sbjct 535 CCTTATTAG 543 > AT5G28330.1 | Symbols: | pseudogene, RNA recognition motif (RRM) - containing protein, contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); blastp match of 59% identity and 2.3e-35 P-value to GP|29371361|gb|AAO72701.1||AY224581 putative RNA-binding protein {Oryza sativa (japonica cultivar-group)} | chr5:10307169-10308142 FORWARD LENGTH=974 Length=974 Score = 355 bits (192), Expect = 7e-97 Identities = 206/213 (97%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 958 CAGGTCAAGGCATTGTACATCAAGAACTTGCCTAGAGATATAACACAAGAACGTCTAAAG 1017 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 251 CAGGTCAAGGCATTGTACATCAAGAATTTACCTAGAGATATAACACAAGAACGTCTAAAG 310 Query 1018 GCATTATTTGAACATCACGGGAAAATACTGAAAGTGGTGATTCCACCAGCAAAACCAGGA 1077 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 311 GCATTACTTGAACATCACGGGAAAATACTGAAAGTGGTGATCCCACCAGCAAAACCAGGA 370 Query 1078 AAGGAAGACAGTAGATACGGATTTGTGCACTATGCAGAGAGGACAAGTGTCATGCGAGCT 1137 |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| Sbjct 371 AAGGAAGACAGTAGATACGGATTTGTGCACTACGCAGAGAGGACAAGCGTAATGCGAGCT 430 Query 1138 TTGAAAAACACTGAAAGATATGAGATTGATGGT 1170 ||||||||||||||||||||||||||||||||| Sbjct 431 TTGAAAAACACTGAAAGATATGAGATTGATGGT 463 Score = 172 bits (93), Expect = 7e-42 Identities = 100/103 (97%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1245 GAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCATGGCTCCTAGTCC 1304 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 476 GAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCATGGCTCTTAGTCC 535 Query 1305 CTTTGGTGCTCTTGGTGGATTTGGAGCTTCTGCCTACTCACAA 1347 | |||||||||||||||||||||||||||||||||| |||||| Sbjct 536 C-TTGGTGCTCTTGGTGGATTTGGAGCTTCTGCCTATTCACAA 577 Score = 148 bits (80), Expect = 1e-34 Identities = 92/98 (94%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 865 ATGTCAAATCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 924 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCAAATCCGAGTTTCAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCA 60 Query 925 AGGAGTGGAGGAGGAGGAGACTCTTCGGCTTCCCAGGT 962 ||||||||||||| |||||||| ||| || || ||||| Sbjct 61 AGGAGTGGAGGAGAAGGAGACTTTTCTGCCTCTCAGGT 98 Score = 139 bits (75), Expect = 8e-32 Identities = 83/87 (95%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1348 CCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATAATGTTA 1407 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 667 CCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATCATGTTA 726 Query 1408 CCCGATGGAAGAATCGGATACGTCTTG 1434 || |||||||| ||| ||||||||||| Sbjct 727 CCTGATGGAAGGATCCGATACGTCTTG 753 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81124080720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5