BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485641
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52720.1 | Symbols: CAH1, ATACA1, ACA1 | alpha carbonic anhy... 1476 0.0
> AT3G52720.1 | Symbols: CAH1, ATACA1, ACA1 | alpha carbonic anhydrase
1 | chr3:19538690-19541284 REVERSE LENGTH=1031
Length=1031
Score = 1476 bits (799), Expect = 0.0
Identities = 942/1010 (93%), Gaps = 14/1010 (1%)
Strand=Plus/Plus
Query 30 CTCCACAGAGATTTCCAACAAAACAGGAATTAAAATACAAgatgatgatgatgatgatga 89
||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||
Sbjct 22 CTCCACAGAGATTTCCAACAAAACAGGAACTAAAACACAAGATGAAGATTATGATGATGA 81
Query 90 tTAAGCTCTGCTTCTTAGCCATAG-CCCTCCTCTGCATTGCTCCTGCAAATGCTCAGACA 148
|||||||||||||||| |||| | ||||| |||||||||| |||||| |||||||||||
Sbjct 82 TTAAGCTCTGCTTCTTCTCCAT-GTCCCTCATCTGCATTGCACCTGCAGATGCTCAGACA 140
Query 149 CAAGGAGTAGTGTTTGGATATAAAGGCAAAAATGGACCAAACCAATGGGGACATTTAAAC 208
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 141 GAAGGAGTAGTGTTTGGATATAAAGGCAAAAATGGACCAAACCAATGGGGACACTTAAAC 200
Query 209 CCTCACTTCACCAAATGCGCGGTGGGTAAATTGCAATCTCCAATTGATATCCAAAGGAGA 268
||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 201 CCTCACTTCACCACATGCGCGGTCGGTAAATTGCAATCTCCAATTGATATTCAAAGGAGG 260
Query 269 CAAATATTTTATAACCGCAGATTGGAA-TCGCTACACCGCGATTACTATTTCACAAATGC 327
||||||||||| |||| || ||| ||| || ||||||| || ||||| |||||||| ||
Sbjct 261 CAAATATTTTACAACCACAAATT-GAATTCAATACACCGTGAATACTACTTCACAAACGC 319
Query 328 AACGCTGGTGAACCACGTCTGTAATGTTGCGATGTTCTTTGGGGAAGGAGCAGGAGATGT 387
||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 320 AACACTAGTGAACCACGTCTGTAATGTTGCCATGTTCTTCGGGGAGGGAGCAGGAGATGT 379
Query 388 GATAATCGATAATAAGAACTATACCTTACTGCAAATGCATTGGCATACTCCTTCTGAACA 447
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 380 GATAATAGAAAACAAGAACTATACCTTACTGCAAATGCATTGGCACACTCCTTCTGAACA 439
Query 448 TCATCTCCATGGAGTCCAATATGCAGCTGAGCTGCACATGGTACACCAAGCAAAAGATGG 507
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCACCTCCATGGAGTCCAATATGCAGCTGAGCTGCACATGGTACACCAAGCAAAAGATGG 499
Query 508 AAGCTTTGCTGTGGTGGCAAGTCTCTTCAAAATCGGCACCGAAGAGCCTTTCCTCTCTCA 567
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 500 AAGCTTTGCTGTGGTGGCAAGTCTCTTCAAAATCGGCACTGAAGAGCCTTTCCTCTCTCA 559
Query 568 GATGAAGGATAAATTGGTGAAGCTAAAGGAAGAGAGATTCAAAGGGAACCAAACAGCACA 627
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 560 GATGAAGGAGAAATTGGTGAAGCTAAAGGAAGAGAGACTCAAAGGGAACCACACAGCACA 619
Query 628 AGTGGAAGTAGGAAGAATCGACACAAGACACATCGAACGTAGGACTCGAAAGTACTTCAG 687
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 620 AGTGGAAGTAGGAAGAATCGACACAAGACACATTGAACGTAAGACTCGAAAGTACTACAG 679
Query 688 ATACGTTGGTTCACTCACTACTCCTCCTTGCTCCGAGAACGTTTCTTGGACCATCCTTGG 747
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ATACATTGGTTCACTCACTACTCCTCCTTGCTCCGAGAACGTTTCTTGGACCATCCTTGG 739
Query 748 CAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACTCAGATCTCCATTGGATAAATC 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 740 CAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACTCAGATCTCCATTGGACACTTC 799
Query 808 TTTCAAGAACAATTCAAGACCTTGTCAACCCCTACA-CGGCCGGAGAGTTGAGATGTTCC 866
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 800 TTTCAAGAACAATTCAAGACCGTGTCAACCCCT-CAACGGCCGGAGAGTTGAGATGTTCC 858
Query 867 ACGACC--G----TGTCGATATAAAAGACACCGGCAACaaaaagaaaaaaCCCAATTAAA 920
|||||| | |||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 859 ACGACCACGAGCGTGTCGATAAAAAAGAAACCGGTAACAAAAAGAAAAAACCCAATTAAA 918
Query 921 ATA-TTGTTACATTGTCTATTGGTTTGTTTAGAACCCTAATTAGCTTTGTAAAACTAATA 979
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 ATAGTT-TTACATTGTCTATTGGTTTGTTTAGAACCCTAATTAGCTTTGTAAAACTAATA 977
Query 980 ATCTCTTATGGAGTACTGTGTTGTTGTTTGCGACTTGATCTTCGTTTTCC 1029
|||||||||| |||||||||||||||||| ||||||||| | || |||||
Sbjct 978 ATCTCTTATGTAGTACTGTGTTGTTGTTTACGACTTGATATACGATTTCC 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5