BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485652 Length=1081 Score E Sequences producing significant alignments: (Bits) Value AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family prote... 1485 0.0 > AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family protein | chr3:19569311-19570682 FORWARD LENGTH=1129 Length=1129 Score = 1485 bits (804), Expect = 0.0 Identities = 1019/1111 (92%), Gaps = 61/1111 (5%) Strand=Plus/Plus Query 1 AAAAATAAAATACCGTTAATAATTTTTTGCTATTTAATTTTAAGCAGCGTCGtctctgtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28 AAAAATAAAATACCGTTAATAATTTTTTGCTATTTAATTTTAAGCAGCGTCGTCTCTGTT 87 Query 61 ttcgccgttgttt-c--cttcttcttc-tc-tctttctctttcttatatctcctttttct 115 ||||||||||||| | |||||||||| || |||||||||||||||||||| ||||||| Sbjct 88 TTCGCCGTTGTTTCCTTCTTCTTCTTCTTCTTCTTTCTCTTTCTTATATCT--TTTTTCT 145 Query 116 cttcccaattctctcatcgatcactgaa---tcttcttcttcttcttccttctctCAAGA 172 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 146 CTTCCCAATTTTCTCATCGATCACTGAATCTTCTTCTTCTTCTTCTTCCTTCTCTCAAGA 205 Query 173 ACAGGTAAATTATTTTCAACGAGCTTGATCGATAAATTCTCTCAAGATCCATGGCGGAAG 232 ||| | | || |||| ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 206 ACA-G--ATTTTTTTTAAACGAGCTTGATCAATAAATTCTCTCAAGATCTATGGCGGAAG 262 Query 233 AACATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGTGGCTTCCTCG 292 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 AGCATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGTGGCTTCCTCG 322 Query 293 GCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTTTGCCTCAAACAAC 352 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 323 GCAGCTCCGCCACCATGAATCTCTGTTCTAATTGTTACGGCGATCTTTGTCTCAAACAAC 382 Query 353 AACAACAA---TCCTCCATCAAATCCACCGTCGAATCTTCCCTCTCCGTATCTCCTCCTT 409 |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 383 AACAACAATCCTCCTCCATCAAATCCACCGTTGAATCTTCCCTCTCTGTATCTCCTCCGT 442 Query 410 CATCATCATCGGAGATCGCTTCCATCTCTTCTCCGATCATCCCTCCTCTCCTTAAAACTC 469 | |||||||| |||| |||||||||||||||||||||||||||||||||| || Sbjct 443 CGTCATCATC----ATCG--GAGATCTCTTCTCCGATCATCCCTCCTCTCCTTAAAAATC 496 Query 470 CCTCCGTCAAGCTAGAGGTACCGGAGAAAAAGCCGGTGAATT--C-GCCG-C--CGGAGC 523 | || ||||||||||||||||||||||||||| |||||| || | |||| | |||||| Sbjct 497 CATCAGTCAAGCTAGAGGTACCGGAGAAAAAGGCGGTGATTTCGCTGCCGACGACGGAGC 556 Query 524 AGAATCAGCAACAGAGGCCGAATCGGTGCACGACGTGTAGAAAACGGGTCGGGTTAACCG 583 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 557 AGAATCAGCAACAGAGGCCGAATCGGTGCACGACGTGTAGGAAACGGGTCGGGTTAACCG 616 Query 584 GATTCAAGTGCCGGTGCGGTACGATGTTTTGTGGGGTCCATAGGTACCCGGAGATCCATG 643 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 617 GATTCAAGTGCCGGTGCGGTACGATGTTTTGCGGGGTTCATAGGTACCCGGAGATCCATG 676 Query 644 GATGCAGCTACGATTTCAAATCGGCCGGTCGTGAAGAGATCGCGAAAGCGAATCCGTTGG 703 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 677 GATGCAGCTACGATTTCAAATCGGCCGGACGTGAAGAGATCGCGAAAGCGAATCCGTTGG 736 Query 704 TGAAAGCAGCGAAGCTTCAGAAGATTTGATCAGAGCCGTTCGATGCGTTGAC-TTT--TC 760 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || Sbjct 737 TGAAAGCAGCGAAGCTTCAGAAGATATGATCAGAGCCGTTCGATGCGTTGACTTTTCCTC 796 Query 761 TCGTAAGTCTTCAATTTTCTACGCGTATGTGTGTCCTCCGTCCCCCGAGAAATACGGATG 820 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 797 TCGTAAGTCTTC-A-TTTCTACGCGTATGTGTGTCCTCCGTCCCCCGAGAAATACGGATG 854 Query 821 GTGTCGA--T--TTGATCTCAGCCGTTGGATC--AAATGGTTTATTATTGTAAAAGATTG 874 ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 855 GTGTCGATTTGATTGATCTCAGCCGTTGGATCAAAAATGGTTTATTATTGTAAAAGATTG 914 Query 875 ATTATGTATTTATCAAAGGGACACGTGTCACGTGGTTTTAGGATGGAGATGctttcgctt 934 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 915 ATTATGTATTTATCAAAGGGACACGTGTCACGTGGTTTTAGGATGGAGACGCTTTCGCTT 974 Query 935 tcttcttcattttcctttaattttattttctttttcctt-cAGAAAGAAATAAGATTATT 993 | |||| | || | | ||||||||||||||||||| |||||||||||||||||||| Sbjct 975 T-TTCTCC-TT--C----A-TTTTATTTTCTTTTTCCTTTCAGAAAGAAATAAGATTATT 1025 Query 994 CGCGTTGGCttttttttttttttttttttttttAATTCCGGCTTATTATTATTATT---G 1050 |||||||||||||| ||||| || ||||||||||||||||||||||| | Sbjct 1026 CGCGTTGGCTTTTTCTTTTTATTA---------AATTCCGGCTTATTATTATTATTATTG 1076 Query 1051 TGTGGCTTTTGCGTGTACAAAGTCTATTCAG 1081 ||||||||||||||||||||||||||||||| Sbjct 1077 TGTGGCTTTTGCGTGTACAAAGTCTATTCAG 1107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52961574975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5