BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485670 Length=825 Score E Sequences producing significant alignments: (Bits) Value AT3G52960.1 | Symbols: | Thioredoxin superfamily protein | chr... 1205 0.0 > AT3G52960.1 | Symbols: | Thioredoxin superfamily protein | chr3:19639668-19640619 FORWARD LENGTH=952 Length=952 Score = 1205 bits (652), Expect = 0.0 Identities = 792/854 (93%), Gaps = 31/854 (4%) Strand=Plus/Plus Query 1 TTCACCTAAACAGCATCAAATGGCGACTTCTCTCTCCGTTTCTAGATTCA--T-CTCCTC 57 ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| Sbjct 14 TTCACCTAAACAGCATC-AATGGCGACTTCTCTCTCCGTTTCTAGATTCATGTCCTCCTC 72 Query 58 CTCCTCCG------CCATCGCTAAGCCGTTACTATCCCCCACCGTCTCCTTCACCGCGCC 111 | || ||| || |||||||||||||||| ||||||||||| |||||||||||||| Sbjct 73 CGCCACCGTTATCTCCGTCGCTAAGCCGTTACTTTCCCCCACCGTATCCTTCACCGCGCC 132 Query 112 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCCCTCAAATTCCGCAACCGCCGCAC 171 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 133 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCTCTCAAATTCCGCAACCGCCGCAC 192 Query 172 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCCACAACACCCGTCACCGCCTCCATTTC 231 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 193 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCTACGACACCCGTCACCGCCTCCATTTC 252 Query 232 CGTCGGAGACAAGCTCCCAGACTCCACCCTCTCCTACCTCGATCCATCCACCGGAGACGT 291 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 253 CGTCGGAGACAAGCTCCCAGACTCCACTCTCTCCTACCTCGATCCATCCACCGGAGACGT 312 Query 292 CAAAACCGTAACCGTCTCATCCCTAACCGCCGGAAAGAAAACAATCCTATTCGCCGTACC 351 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 313 CAAAACAGTAACCGTCTCATCCCTAACCGCCGGGAAGAAAACAATCCTATTCGCCGTTCC 372 Query 352 CGGAGCATTCACACCAACCTGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCTGG 411 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 373 CGGCGCATTCACACCAACATGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCCGG 432 Query 412 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTTGT 471 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 433 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTCGT 492 Query 472 CATGGAAGCGTGGAGGAAAGATCTCGGAATCAACGATGAGGTAATGTTGCTTTCCGATGG 531 ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 493 GATGGAAGCGTGGAGGAAAGATCTTGGAATTAACGATGAGGTAATGTTGCTATCCGATGG 552 Query 532 TAACGGTGAATTCACAGGGAAGCTTGGAGTTGAATTGGATTTGAGGGATAAGCCTGTAGG 591 || || |||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 553 AAATGGCGAATTCACAGGGAAGCTTGGTGTTGAATTGGATTTGAGGGATAAGCCTGTGGG 612 Query 592 ACTTGGAGTTAGGTCAAGAAGATATGCGATATTGGCTGATGATGGTGTTGTGAAAGTTCT 651 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 613 ACTTGGAGTTAGGTCAAGGAGATATGCGATTTTGGCTGATGATGGTGTTGTGAAAGTTCT 672 Query 652 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 732 Query 712 CTGATTCTT-TC-TT--CT--TC--TT-C-TCTGT-TTCGAt-tttt---tttt-ttt-- 753 ||||||||| | || || || || | ||| | ||| | |||| |||| ||| Sbjct 733 CTGATTCTTATGATTTTCTCATCAATTTCGTCT-TCTTCTCTGTTTTGAATTTTCTTTAC 791 Query 754 t-tGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCAT-ATCGGATTTGTAATGGAATA 811 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 792 TCTGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCATTATCGGATTTGTAATGGAATA 851 Query 812 ATGAATTTAGAGGT 825 ||||| |||||||| Sbjct 852 ATGAAGTTAGAGGT 865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40187317600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5