BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485698
Length=2629
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53230.1 | Symbols: | ATPase, AAA-type, CDC48 protein | chr... 4115 0.0
AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division c... 1910 0.0
> AT3G53230.1 | Symbols: | ATPase, AAA-type, CDC48 protein | chr3:19723351-19726672
FORWARD LENGTH=2696
Length=2696
Score = 4115 bits (2228), Expect = 0.0
Identities = 2500/2629 (95%), Gaps = 28/2629 (1%)
Strand=Plus/Plus
Query 1 CActtctcgaatcttcttcttcttctctgcgaag--------ctctctctA-T--AATAT 49
|||||||||||||||||| ||||||||||||||| ||||||||| | | |||
Sbjct 1 CACTTCTCGAATCTTCTTTTTCTTCTCTGCGAAGCTCTCTCTCTCTCTCTACTCGATTAT 60
Query 50 CAAACATGGCGAATCAAGCTGAATCATCCGACTCGAAGGGGACGAAGAGGGATTTTAGCA 109
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 61 CAAACATGGCGAATCAAGCTGAATCATCTGATTCGAAGGGGACGAAGAAGGATTTTAGCA 120
Query 110 CCGCGATTCTGGAGCGAAAGAAGGCGGCGAATCGTTTGGTTGTGGATGAGGCGATTAACG 169
|||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 121 CCGCGATTCTGGAGAAAAAGAAGGCAGCGAATCGTTTGGTTGTGGATGAAGCCATTAACG 180
Query 170 ATGATAACTCTGTCGTTTCTCTTCACCCTGAAACCATGGAGAAGCTACAGCTTTTTCGTG 229
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ATGATAACTCCGTCGTTTCTCTTCACCCTGATACCATGGAGAAGCTACAGCTTTTTCGTG 240
Query 230 GTGATACCGTTTTGATTAAGGGAAAGAAGAGGAAGGATACTGTGTGTATAGCTTTAGCTG 289
||||||| | || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 GTGATACTATCTTAATCAAGGGAAAGAAGAGGAAGGATACTGTGTGTATTGCTTTAGCTG 300
Query 290 ATGATACTTGTGATGAACCAAAAATTAGGATGAACAAGGTTGTTAGGTCTAACCTCAGGG 349
|||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 301 ATGAGACATGTGATGAACCAAAAATTAGAATGAACAAGGTTGTTAGGTCTAATCTCAGAG 360
Query 350 TTAGGCTTGGAGATGTTATCTCTGTTCATCAATGTCCTGATGTCAAGTATGGGAAGCGTG 409
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTAGGCTTGGGGATGTTATTTCTGTTCATCAATGTCCTGATGTCAAGTATGGGAACCGTG 420
Query 410 TTCACATCTTGCCTATAGATGATACCATTGAAGGAGTTAGTGGCAATATATTTGATGCAT 469
|||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TTCACATCTTACCTTTAGATGATACCATTGAAGGAGTAAGTGGCAATATATTTGATGCAT 480
Query 470 ACCTTAAACCTTATTTCTTGGAGGCATACCGTCCGGTGAGGAAGGGTGATCTTTTCTTGG 529
||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | |
Sbjct 481 ACCTTAAACCTTATTTCTTAGAGGCATATCGTCCGGTGAGGAAGGGCGATCTTTTCCTAG 540
Query 530 TTAGAGGAGGGATGAGAAGTATTGAGTTTAAGGTTATTGAGACCGATCCTGCTGAGTACT 589
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 541 TTAGAGGAGGGATGAGAAGTATTGAGTTTAAGGTTATTGAAACTGATCCTGCTGAGTACT 600
Query 590 GTGTGGTTGCTCCAGATACAGAAATTTTCTGTGAGGGTGAACCGATAAAGAGAGAGGATG 649
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 GTGTGGTTGCTCCAGATACAGAAATTTTCTGTGAAGGTGAACCGATAAAGAGAGAGGATG 660
Query 650 AGGAGAGGTTGGATGAAGTTGGGTATGATGATGTTGGTGGTGTCAGGAAACAAATGGCTC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGAGAGGTTGGATGAAGTTGGGTATGATGATGTTGGTGGTGTCAGGAAACAAATGGCTC 720
Query 710 AGATTCGGGAACTTGTTGAGCTCCCATTGAGGCATCCACAACTCTTCAAGTCCATTGGTG 769
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 721 AGATTCGTGAACTTGTTGAGCTCCCATTGAGGCATCCACAGCTCTTCAAGTCTATTGGTG 780
Query 770 TGAAACCTCCCAAAGGAATCTTGCTATATGGTCCC-CCTGGTTCTGGAAAGACACTGATT 828
||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||| |||
Sbjct 781 TGAAACCTCCCAAAGGAATCTTGCTCTATGG-CCCTCCTGGTTCTGGGAAGACACTTATT 839
Query 829 GCCCGTGCTGTTGCTAATGAGACTGGTGCATTTTTCTTCTGTATCAATGGTCCCGAGATC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCCCGTGCTGTTGCTAATGAGACTGGTGCATTTTTCTTCTGTATCAATGGTCCCGAGATC 899
Query 889 ATGTCGAAGCTAGCTGGTGAGAGTGAAAGCAACCTCAGGAAAGCGTTTGAGGAAGCTGAG 948
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 ATGTCGAAGCTAGCTGGTGAGAGTGAAAGTAACCTCAGGAAAGCGTTTGAGGAAGCTGAG 959
Query 949 AAGAATGCCCCCTCAATCATCTTTATTGATGAGCTCGATTCGATTGCTCCAAAAAGAGAA 1008
||||||||||| || ||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 960 AAGAATGCCCCTTCGATCATATTCATTGATGAGATCGATTCGATTGCTCCAAAAAGAGAG 1019
Query 1009 AAGACACACGGGGAAGTTGAAAGACGTATTGTATCCCAGCTCTTGACACTTATGGATGGG 1068
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 AAGACTCACGGAGAAGTTGAAAGACGGATTGTATCCCAGCTCTTGACACTTATGGATGGT 1079
Query 1069 CTTAAATCCAGAGCCCATGTCATTGTTATGGGAGCGACCAACCGTCCCAACAGCATTGAC 1128
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1080 CTTAAATCCAGAGCCCATGTGATTGTTATGGGAGCTACCAACCGTCCCAACAGCATTGAC 1139
Query 1129 CCCGCTTTGAGAAGGTTTGGACGATTTGACAGAGAGATTGATATTGGTGTTCCTGATGAG 1188
|| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1140 CCTGCTTTGAGAAGATTTGGACGTTTTGATAGAGAAATTGATATTGGTGTTCCTGATGAG 1199
Query 1189 ATTGGTCGTCTTGAAGTTCTCAGGATTCACACCAAGAACATGAAGCTTGCGGAAGATGTT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATTGGTCGTCTTGAAGTTCTCAGGATTCACACCAAGAACATGAAGCTTGCGGAAGATGTT 1259
Query 1249 GATTTGGAAAGAGTATCCAAAGACACCCATGGTTATGTTGGTGCTGATCTTGCAGCATTA 1308
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1260 GATTTGGAAAGAGTATCTAAAGACACCCATGGGTATGTTGGTGCTGATCTTGCAGCATTA 1319
Query 1309 TGCACTGAAGCTGCTCTCCAATGCATTAGGGAGAAGATGGACGTAATTGACCTAGATGAC 1368
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1320 TGCACTGAAGCTGCTCTCCAATGCATTAGGGAGAAGATGGATGTAATTGACCTAGATGAC 1379
Query 1369 GAGGAGATAGATGCTGAAATTCTCAATTCTATGGCTGTGACTAATGATCATTTCCAGACT 1428
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1380 GAGGAGATAGATGCTGAAATTCTCAATTCTATGGCTGTCAGTAATGATCATTTCCAGACT 1439
Query 1429 GCCCTTGGTAACAGCAATCCTTCAGCTCTACGTGAGACGGTCGTTGAGGTGCCTAATGTT 1488
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 GCCCTTGGTAACAGCAATCCTTCAGCTCTACGTGAGACTGTCGTTGAGGTGCCTAATGTG 1499
Query 1489 TCTTGGGAGGACATCGGTGGTCTTGAGAATGTCAAGAGGGAGCTCCAAGAGACTGTTCAA 1548
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCTTGGGAGGACATTGGTGGTCTTGAGAATGTCAAGAGGGAGCTCCAAGAGACTGTTCAA 1559
Query 1549 TATCCAGTGGAGCATCCTGAGAAATTCGAGAAGTTTGGGATGTCACCGTCTAAAGGAGTC 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TATCCAGTGGAGCATCCTGAGAAATTCGAGAAGTTTGGGATGTCACCGTCTAAAGGAGTC 1619
Query 1609 CTATTCTATGGTCCCCCTGGTTGTGGAAAGACCCTCTTGGCTAAGGCTATTGCGAACGAG 1668
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CTATTCTATGGCCCCCCTGGTTGTGGAAAGACCCTCTTGGCTAAGGCTATTGCGAACGAG 1679
Query 1669 TGTCAAGCCAACTTCATTAGTATCAAAGGTCCTGAGCTCCTCACAATGTGGTTTGGAGAG 1728
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1680 TGTCAAGCCAACTTCATTAGTATCAAGGGTCCTGAGCTCCTCACAATGTGGTTTGGAGAG 1739
Query 1729 AGTGAAGCCAATGTGAGAGAGATATTCGACAAGGCACGCCAGTCTGCTCCGTGTGTTCTT 1788
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1740 AGTGAAGCCAATGTGAGAGAGATATTCGACAAGGCACGACAGTCTGCCCCTTGTGTTCTT 1799
Query 1789 TTCTTTGATGAGCTTGACTCCATCGCCACTCAGAGAGGGAACAGTGTTGGAGATGCTGGT 1848
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TTCTTTGATGAGCTGGACTCCATCGCCACTCAGAGAGGGAACAGTGTTGGAGATGCTGGT 1859
Query 1849 GGTGCAGCAGATAGAGTATTGAACCAGCTTCTTACAGAGATGGATGGAATGAATGCTAAG 1908
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1860 GGTGCAGCAGATAGAGTATTGAACCAGCTTCTTACGGAGATGGATGGAATGAATGCTAAG 1919
Query 1909 AAGACGGTCTTCATCATCGGAGCTACAAACAGACCAGACATCATCGACCCTGCACTTCTG 1968
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1920 AAGACGGTCTTCATCATCGGAGCTACAAACAGACCAGACATTATTGATCCTGCACTTCTG 1979
Query 1969 CGTCCTGGTCGTCTCGATCAGCTCATCTATATTCCTCTTCCTGATGAGGAGTCTCGTTAC 2028
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1980 CGTCCTGGTCGTCTCGATCAGCTCATCTACATTCCTCTTCCTGATGAGGAGTCTCGTTAC 2039
Query 2029 CAGATCTTCAAGTCTTGCTTGAGGAAATCCCCTGTGGCTAAAGATGTTGACCTTAGGGCT 2088
|||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 2040 CAGATCTTTAAGTCTTGCTTGAGGAAATCACCTGTGGCGAAAGATGTTGACCTGAGGGCT 2099
Query 2089 CTTGCGAAGTACACCCAAGGCTTCAGCGGTGCAGACATCACAGAGATTTGCCAGCGTTCT 2148
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2100 CTTGCTAAGTACACCCAAGGCTTCAGTGGTGCGGACATCACAGAGATTTGCCAGCGTTCT 2159
Query 2149 TGCAAGTATGCGATCAGAGAAAACATCGAGAAGGATATTgagaaggagaggaagagagca 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 TGCAAGTATGCGATCAGAGAAAACATCGAGAAGGATATTGAGAAGGAGAGGAAGAGAGCA 2219
Query 2209 gagtcgccagaagcaatggaagaggacgaggaggagaTTGCAGAGATTAAAGCTGGTCAC 2268
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2220 GAGTCGCCAGAAGCAATGGAAGAGGATGAGGAGGAGATTGCAGAGATTAAAGCTGGTCAC 2279
Query 2269 TTTGAGGAATCCATGAAATATGCAAGGAGATCAGTAAGTGATGCAGACATTCGCAAGTAT 2328
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 2280 TTTGAGGAATCCATGAAATACGCTAGGAGATCAGTGAGTGATGCAGACATTCGCAAGTAT 2339
Query 2329 CAGGCTTTTGCTCAGACTCTACAGCAATCACGTGGGTTTGGAAGCGAGTTCAGGTTCCCA 2388
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2340 CAGGCTTTTGCTCAGACTCTCCAGCAATCACGTGGGTTTGGAAGCGAGTTCAGGTTTCCA 2399
Query 2389 GATGCGCCGACAGGGACT---GGAGCT------G---CTGC--C-ACAGTCGGGGGAGTC 2433
|||||||||||||||||| |||||| | |||| | ||||| |||||||||
Sbjct 2400 GATGCGCCGACAGGGACTACTGGAGCTTTCCCTGGAGCTGCTGCCACAGTTGGGGGAGTC 2459
Query 2434 GACCCGTTTGCCACATCCGGAGGAGCAGCCGACGATGATGATCTCTACAGTTGAAAGATC 2493
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct 2460 GACCCGTTTGCCACATCCGGAGGAGCAGCGGATGATGATGATCTCTACAGTTGAAAGGTC 2519
Query 2494 TGATCAGACCCTGTGACTACTGTCTTTAGTCTTTTACTTTGTTCTGCTTGAAAAACTTTT 2553
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2520 TGATCAGACCCTGTGACTACTCTCTTTAGTCTTTAACTTTGTTCTGCTTGAAAAACTTTC 2579
Query 2554 GATGGTCTTTGTTGTGTTTTATTTATAAGTCTTTTGTACATAATCGTTG 2602
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2580 GATGGTCTTTGTTGTGTTTTATTTATAAGTCTTTTGTATATAATCGTTG 2628
> AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division
cycle 48 | chr3:3019340-3023052 FORWARD LENGTH=2804
Length=2804
Score = 1910 bits (1034), Expect = 0.0
Identities = 1926/2355 (82%), Gaps = 67/2355 (3%)
Strand=Plus/Plus
Query 66 AGCTGAATCATCCGACTCGAAGGGGA-CGAAGAGGGATTTTAGCACCGCGATTCTGGAGC 124
||||||||| || |||||||| | |||||| ||||| || || || ||||| |||
Sbjct 166 AGCTGAATCTTCAGACTCGAA----ATCGAAGAAAGATTTCAGTACTGCTATTCTCGAGA 221
Query 125 GAAAGAAGGCGGCGAATCGTTTGGTTGTGGATGAGGCGATTAACGATGATAACTCTGTCG 184
| |||||| | |||| ||| | || || |||||||| || |||||||||||||| ||||
Sbjct 222 GGAAGAAGTCTCCGAACCGTCTCGTCGTCGATGAGGCTATCAACGATGATAACTCCGTCG 281
Query 185 TTTCTCTTCACCCTGAAACCATGGAGAAGCTACAGCTTTTTCGTGGTGATACCGTTTTGA 244
| ||||||||||||| ||||||||||||||| ||||| || |||||||||||| || | |
Sbjct 282 TCTCTCTTCACCCTGCAACCATGGAGAAGCTTCAGCTCTTCCGTGGTGATACCATTCTCA 341
Query 245 TTAAGGGAAAGAAGAGGAAGGATACTGTGTGTATAGCT-TTAGCTGATGATACTTGTGAT 303
| ||||| |||||||||||||| ||||| || || ||| || |||||||| || |||||
Sbjct 342 TCAAGGGTAAGAAGAGGAAGGACACTGTCTGCATTGCTCTT-GCTGATGAGACATGTGAG 400
Query 304 GAACCAAAAATTAGGATGAACAAGGTTGTTAGGTCTAACCTCAGGGTTAGGCTTGGAGAT 363
|| ||||| || || ||||| || || || || |||||| | |||||||| || ||||||
Sbjct 401 GAGCCAAAGATCAGAATGAATAAAGTAGTCAGATCTAACTTGAGGGTTAGACTGGGAGAT 460
Query 364 GTTATCTCTGTTCATCAATGTCCTGATGTCAAGTATGGGAAGCGTGTTCACATCTTGCCT 423
||||| |||||||| ||||| || || |||||||| || ||||||||||||||| |||||
Sbjct 461 GTTATATCTGTTCACCAATGCCCAGACGTCAAGTACGGAAAGCGTGTTCACATCCTGCCT 520
Query 424 ATAGATGATACCATTGAAGGAGTTAGTGGCAATATATTTGATGCATACCTTAAACCTTAT 483
| |||||||| |||||||||| | ||| || |||||||||| ||||| |||||||||
Sbjct 521 GTTGATGATACTGTTGAAGGAGTGACTGGAAACCTATTTGATGCTTACCTGAAACCTTAT 580
Query 484 TT-CTTGGAGGCATACCGTCCGGTGAGGAAGGGTGATCTTTTCTTGGTTAGAGGAGGGAT 542
|| ||| |||||||||||||| ||||||||||||||||| ||| | || |||||||| ||
Sbjct 581 TTCCTT-GAGGCATACCGTCCAGTGAGGAAGGGTGATCTCTTCCTAGTCAGAGGAGGAAT 639
Query 543 GAGAAGTATTGAGTTTAAGGTTATTGAGACCGATCCTGCTGAGTACTGTGTGGTTGCTCC 602
||| ||| | ||||| || ||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 640 GAGGAGTGTGGAGTTCAAAGTTATAGAGACAGATCCTGCTGAGTACTGCGTGGTTGCTCC 699
Query 603 AGATACAGAAATTTTCTGTGAGGGTGAACC-GATAAAGAGAGAGGATGAGGAGAGGTTGG 661
||| ||||| ||||||||||||||||| || | | |||||||||||||| || ||| | |
Sbjct 700 AGACACAGAGATTTTCTGTGAGGGTGAGCCTG-TGAAGAGAGAGGATGAAGAAAGGCTAG 758
Query 662 ATGAAGTTGGGTATGATGATGTTGGTGGTGTCAGGAAACAAATGGCTCAGATTCGGGAAC 721
|||| || || ||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 759 ATGATGTAGGTTATGATGATGTTGGTGGTGTCAGGAAACAGATGGCTCAGATTAGGGAAC 818
Query 722 TTGTTGAGCT-CCCATTGAGGCATCCACAACTCTTCAAGTCCATTGGTGTGAAACCTCCC 780
||||||| || ||| |||||||||||||| || |||||||| |||||||| || || ||
Sbjct 819 TTGTTGAACTTCCC-TTGAGGCATCCACAGCTATTCAAGTCGATTGGTGTTAAGCCACCG 877
Query 781 AAAGGAAT-CTTGCTATATGGTCCCCCTGGTTCTGGAAAGACACTGATTGCCCGTGCTGT 839
|| ||||| ||| || ||||| || ||||| ||||||||||| |||| || ||||||||
Sbjct 878 AAGGGAATTCTT-CTTTATGGACCACCTGGGTCTGGAAAGACTTTGATCGCTCGTGCTGT 936
Query 840 TGCTAATGAGACTGGTGCATTTTTCTTCTGTATCAATGGTCCCGAGATCATGTCGAAGCT 899
|||||||| || ||||| ||||||||||||||||| || || ||||||||||| || |
Sbjct 937 GGCTAATGAAACGGGTGCCTTTTTCTTCTGTATCAACGGACCTGAGATCATGTCCAAATT 996
Query 900 AGCTGGTGAGAGTGAAAGCAACCTCAGGAAAGCGTTTGAGGAAGCTGAGAAGAATGCCCC 959
|||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||
Sbjct 997 GGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTCGAGGAGGCTGAGAAAAATGCGCC 1056
Query 960 CTCAATCATCTTTATTGATGAGCTCGATTCGATTGCTCCAAAAAGAGAAAAGAC-ACACG 1018
|||||||| || ||||||||| |||| || ||||| || |||||||| ||||| | | |
Sbjct 1057 TTCAATCATATTCATTGATGAGATCGACTCTATTGCACCGAAAAGAGAGAAGACTA-ATG 1115
Query 1019 GGGAAGTTGAAAG-ACGTATTGTATCCCAGCTC-TTGACACTTATGGATGGGCTTAAATC 1076
| || ||||| || | | ||||| || |||||| || || || |||||||| || |||||
Sbjct 1116 GAGAGGTTGAGAGGAGG-ATTGTCTCTCAGCTCCTT-ACGCTAATGGATGGACTGAAATC 1173
Query 1077 -CAGAGCCCATGTCATTGTTATGGGAGCGACCAACCGTCCCAACAGCATTGACCCCGCTT 1135
| | || ||||| || || |||||||| ||||| || |||||||| || ||||| ||||
Sbjct 1174 TC-GTGCTCATGTTATCGTCATGGGAGCAACCAATCGCCCCAACAGTATCGACCCAGCTT 1232
Query 1136 TGAGAAGGTTTGGACGATTTGACAGAGAGATTGATATTGGTGTTCCTGATGAGATTGGTC 1195
|||||||||||||| |||||||||| ||||| |||||||| |||||||| || ||||| |
Sbjct 1233 TGAGAAGGTTTGGAAGATTTGACAGGGAGATCGATATTGGAGTTCCTGACGAAATTGGAC 1292
Query 1196 GTCTTGAAGTTCTCAGGATTCACACCAAGAACATGAAGCTTGCGGAAGATGTTGATTTGG 1255
||||||||||||| ||||| || || |||||||||||||| || |||||||| ||| | |
Sbjct 1293 GTCTTGAAGTTCTGAGGATCCATACAAAGAACATGAAGCTGGCTGAAGATGTGGATCTCG 1352
Query 1256 AAAGAGTATC-CAAAG-ACACCCATGGTTATGTTGGTGCTGATCTTGCAGCATTATGCAC 1313
|||| | ||| ||||| |||| || ||||| || ||||||||||||||||| || |||||
Sbjct 1353 AAAG-G-ATCTCAAAGGACACACACGGTTACGTCGGTGCTGATCTTGCAGCTTTGTGCAC 1410
Query 1314 TGAAGCTGCTCTCCAATGCATTAGGGAGAAGATGGACGTAATTGACCTAGATGACGAGGA 1373
|| || || || |||||||| |||||||||||||| || ||||| || || || ||
Sbjct 1411 AGAGGCCGCCCTGCAATGCATCAGGGAGAAGATGGATGTGATTGATCTGGAAGATGACTC 1470
Query 1374 GATAGATGCTGAAATTCTCAATTCTATGGCTGTGACTAATGATCATTTCCAGACTGCCCT 1433
||||| |||||||| |||||||| ||||| || |||||||| |||||||| ||||| ||
Sbjct 1471 CATAGACGCTGAAATCCTCAATTCCATGGCAGTCACTAATGAACATTTCCACACTGCTCT 1530
Query 1434 TGGTAACAGCAATCCTTCAGCTCTACGTGAGACGGTCGTTGAGGTGCCTAATGTTTCTTG 1493
|| |||||||| || || || || ||||| || || || ||||| || || || |||||
Sbjct 1531 CGGGAACAGCAACCCATCTGCACTTCGTGAAACTGTTGTGGAGGTTCCCAACGTCTCTTG 1590
Query 1494 GGAGGACATCGGTGGTCTTGAGAATGTCAAGAGGGAGCTCCAAGAGACTGTTCAATATCC 1553
| | || || || |||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1591 GAATGATATTGGAGGTCTTGAGAATGTCAAGAGAGAGCTCCAGGAGACTGTTCAATACCC 1650
Query 1554 AGTGGAGCATCCTGAGAAATTCGAGAAGTTTGGGATGTCACCGTCTAAAGG-AGTCCTAT 1612
||| ||||| || ||||| || ||||| || |||||||| || || ||||| |||||| |
Sbjct 1651 AGTCGAGCACCCAGAGAAGTTTGAGAAATTCGGGATGTCTCCATC-AAAGGGAGTCCTTT 1709
Query 1613 TCTATGGTCCCCCTGGTTGTGG-AAAGACCCTCTTGGCTAAGGCTATTGCGAACGAGTGT 1671
|||| ||||| ||||| ||||| ||| ||||| ||||| || |||||||| ||||||||
Sbjct 1710 TCTACGGTCCTCCTGGATGTGGGAAA-ACCCTTTTGGCCAAAGCTATTGCCAACGAGTGC 1768
Query 1672 CAAGCCAACTTCATTAGTATCAAAGGTCCTGAGCTCCTCACAATGTGGTTTGGAGAGAGT 1731
||||| || ||||| ||| |||| ||||| ||||| || |||||||||||||||||||||
Sbjct 1769 CAAGCTAATTTCATCAGTGTCAAGGGTCCCGAGCTTCTGACAATGTGGTTTGGAGAGAGT 1828
Query 1732 GAAGCCAATGTGAGAGAGATATTCGACAAGGCACGCCAGTCTGCTCCGTGTGTTCTTTTC 1791
||||| ||||| | || || ||||||||||| || || || ||||| ||||||||||||
Sbjct 1829 GAAGCAAATGTTCGTGAAATCTTCGACAAGGCCCGTCAATCCGCTCCATGTGTTCTTTTC 1888
Query 1792 TTTGATGAGCTTGACTCCATCGCCACTCAGAGAGG-GAAC-A-GTGTTGGAGATGCTGGT 1848
||||||||||| |||||||| || ||||||||||| | | ||| ||| |||| |||
Sbjct 1889 TTTGATGAGCTCGACTCCATTGCAACTCAGAGAGGAGGTGGAAGTGGTGGCGATGGAGGT 1948
Query 1849 GGTGCAGCAGATAGAGTATTGAACCAGCTTCTT-ACAGAGATGGATGGAATGAATGCTAA 1907
||||| || || ||||| |||||||||||| || || |||||||| ||||||||||| ||
Sbjct 1949 GGTGCTGCGGACAGAGTCTTGAACCAGCTT-TTGACTGAGATGGACGGAATGAATGCCAA 2007
Query 1908 GAAGACGGTCTTCATCATCGGAGCTACAAACAGACCAGACATCATCGACCCTGCACTTCT 1967
||| || |||||||||||||||||||| |||||||| ||||| ||||| | || |||||
Sbjct 2008 GAAAACCGTCTTCATCATCGGAGCTACCAACAGACCTGACATTATCGATTCAGCTCTTCT 2067
Query 1968 GCGTCCTGGTCGTCTCGATCAGCTCATCTATATTCCTCTTCCTGATGAGGAGTCTCGT-T 2026
|||||||| | || || |||||||| || ||||| || || |||||||| || ||| |
Sbjct 2068 CCGTCCTGGAAGGCTTGACCAGCTCATTTACATTCCACTACCAGATGAGGATTCCCGTCT 2127
Query 2027 ACCAGATCTTCAAGTCTTGC-TTGAGGAAATCCCCTGTGGCTAAAGATGTTGACCTTAGG 2085
| | ||||||||| | || ||||||||||| ||| | ||||||||||| ||| | ||
Sbjct 2128 -CAATATCTTCAAGGCC-GCCTTGAGGAAATCTCCTATTGCTAAAGATGTAGACATC-GG 2184
Query 2086 -GCTCTTGCGAAGTACACCCAAGGCTTCAGCGGTGCAGACATCACAGAGATTTGCCAGCG 2144
|| ||||| || ||||| || || ||||| ||||| || ||||| |||||||||||| |
Sbjct 2185 TGCACTTGCTAAATACACTCAGGGTTTCAGTGGTGCTGATATCACTGAGATTTGCCAGAG 2244
Query 2145 TTCTTGCAAGTATGCGATCAGAGAAAACATCGAGAAGGATATTgagaaggagaggaagag 2204
|||||||||| || |||||||||||||| |||||||| ||||| ||||||| || |||
Sbjct 2245 AGCTTGCAAGTACGCCATCAGAGAAAACATTGAGAAGGACATTGAAAAGGAGAAGAGGAG 2304
Query 2205 -agc-agagtcgccagaagcaatggaagaggacg-ag-g-agga-g-aTTGCAGAGATTA 2257
||| ||| | ||||| |||||||| || || | || | | || | || ||||||| |
Sbjct 2305 GAGCGAGAA-C-CCAGAGGCAATGGAGGAAGATGGAGTGGATGAAGTAT--CAGAGATCA 2360
Query 2258 AAGCTGGTCACTTTGAGGAATCCATGAAATATGCA---AGGAGATCAGTAAGTGATGCAG 2314
|||||| ||||||||||| || ||||| ||||| ||||| | || ||||||||||
Sbjct 2361 AAGCTGCACACTTTGAGGAGTCGATGAAGTATGCGCGTAGGAG-T--GTGAGTGATGCAG 2417
Query 2315 ACATTC-GCAAGTATCAGGCTTTTGCTCAGAC-TCTACAGCAATC-ACGTGGGTTTGGAA 2371
|||| | | ||||| || || ||||||||||| | | ||||| || | | ||||| ||
Sbjct 2418 ACAT-CAGGAAGTACCAAGCCTTTGCTCAGACGT-TGCAGCAGTCTA-GAGGGTTCGGTT 2474
Query 2372 GC-GAGTTCAGGTTC 2385
| ||||||||||||
Sbjct 2475 -CTGAGTTCAGGTTC 2488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130534385686
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5