BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485723
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53470.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 688 0.0
> AT3G53470.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 35 Blast hits to 35 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:19822745-19823406 FORWARD LENGTH=587
Length=587
Score = 688 bits (372), Expect = 0.0
Identities = 457/495 (92%), Gaps = 18/495 (4%)
Strand=Plus/Plus
Query 20 aagaagaagaagaagaaCACAAACACTCAGATAC-TTTT-TTCTTATTTTGTCCGTACCG 77
|||||| ||||||||||||| |||| |||||||| |||| ||||||||||||||||||||
Sbjct 1 AAGAAG-AGAAGAAGAACAC-AACAGTCAGATACTTTTTCTTCTTATTTTGTCCGTACCG 58
Query 78 TAATCGGAAAATGGACATTTCTGTTCGAATCTCCGGCTTAAAATCCTCCAATCTCATCCG 137
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 59 AAATCGGAAAATGGACATTACTGTTCGAATCTCCGGCTTAAAATCCTCCAATCTAATCCG 118
Query 138 AATAATCCCTAGATTCTCAtcttcttcttcttcttctAGATTCCGTTGTTCCAAAAACGA 197
|||| ||||||||||||| ||||| | |||||||||||||| ||||| |||||
Sbjct 119 GATAACCCCTAGATTCTCA------TCTTC--C-TCTAGATTCCGTTGCTCCAACAACGA 169
Query 198 ACCTCCCCGAAACGCAAACGAGTCCAA--C-GGTGGTGGTGGTGATAAATCGTCGACGGA 254
|||||| ||||| | |||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 170 ACCTCCTCGAAAGGGAAACGAGTCCAACGCAGGTGGTGGTGGTGATAAAGCGTCGACGGA 229
Query 255 TTGGGACAAGGCGTGGAAGAATTTCAAGAAGCAGAGCAAGAAGTCATTGTTCTCTCAATT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 230 CTGGGACAAGGCGTGGAAGAATTTCAAGAAGCAGAGCAAGAAGTCATTGTTCTCGCAATT 289
Query 315 CAACGTCGACAAGTACGTGACTTGGAATCC-CCCGAGATCGGAGTTTGACTTGTCGGAAG 373
|||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 290 CAACGTGGACAAGTACGTGACTTGGAATCCTCCC-AGATCGGAGTTTGATTTGTCGGAAG 348
Query 374 AAGTCGATCCCATAAAAAGAACAGAGAGATCCAATCTCATGCTCTGGACAAGTCCGAGGT 433
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 349 AAGTCGATCCTATAAAAAGAACAGAGAGATCCAATCTCATGCTCTGGACAAGTCCAAGGT 408
Query 434 TCACACTTGTCGGAGCCATCGTCATTGTCTCATTCCTCCTTCTCTACACCATTCTTGCTC 493
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TCACACTTGTTGGAGCCATCGTCATTGTCTCATTCCTCCTTCTCTACACCATTCTTGCTC 468
Query 494 CTGTCAAGTAATAAT 508
||||||||| |||||
Sbjct 469 CTGTCAAGTGATAAT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5