BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485748 Length=1024 Score E Sequences producing significant alignments: (Bits) Value AT3G53620.1 | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr... 1489 0.0 > AT3G53620.1 | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr3:19880504-19883672 FORWARD LENGTH=1296 Length=1296 Score = 1489 bits (806), Expect = 0.0 Identities = 990/1070 (93%), Gaps = 48/1070 (4%) Strand=Plus/Plus Query 1 TTCCAAAATTAAAGAGATTTTAATTTATTGTTTTCC-TCCA-AAATATTAATTAATATTC 58 ||||||||||||||||| |||||||||||||||||| |||| ||| | | |||||||||| Sbjct 4 TTCCAAAATTAAAGAGAATTTAATTTATTGTTTTCCTTCCAGAAA-AAT-ATTAATATTC 61 Query 59 TTTCTAAAAT-ATAAATGGAGTCTTCAAATAGCACAGAAGCAGAGACAGAGAGCGGGAAC 117 |||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 62 TTTCTAAACTAAAAAATGGAGTCTTCAAATAGCACAGAAGCAGAGACATAGAGCGGGAAC 121 Query 118 GCGTATAGTTACAGctttcttctcctttagctttcctctct--ac-t-att-gct-tctc 171 |||| |||| |||||||||||||||||||||||| |||||| || | || || |||| Sbjct 122 GCGTTTAGTCACAGCTTTCTTCTCCTTTAGCTTTTCTCTCTACACTTGCTTCTCTCTCTC 181 Query 172 tct-c---------tccttcttGAGATCTGTGCTTGCGTTTCTTCTTCATTCGACGACAT 221 ||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TCTCCTTTGGGTTATCCTTCTTGAGATCTGTGCTTGCGTTTCTTCTTCATTCGACGACAC 241 Query 222 TTTAGCTCGGGAGATTTCAGATTTGTCGATTTGCTCAGCAATGGCGCCACCGATTGAGGT 281 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 242 TTTATCTCGGGAGATTTCAGATTTGTCGATTTGTTCAGCAATGGCGCCACCGATTGAGGT 301 Query 282 TTCCACCAAAAGCTACGTTGAGAAACATGTTTCACTTCCTACTCTTAATGAGAGGATACT 341 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TTCTACCAAAAGCTACGTTGAGAAACATGTTTCACTTCCTACTCTTAATGAGAGGATACT 361 Query 342 TTCGTCCATGAGCCACAGATCAGTTGCTGCACACCCATGGCATGATCTCGAGATAGGACC 401 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 362 TTCGTCCATGAGTCACAGATCAGTAGCTGCACACCCATGGCATGATCTCGAGATAGGACC 421 Query 402 TGAGGCCCCAATTATCTTCAATTGTGTGGTTGAGATAGGAAAAGGGAGCAAGGTGAAGTA 461 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 422 TGAAGCCCCAATTATCTTCAATTGTGTGGTTGAGATAGGAAAAGGGAGCAAGGTGAAATA 481 Query 462 TGAACTTGACAAAACTACCGGTCTCATTAAGGTCGATCGTATTCTTTACTCATCTGTCGT 521 |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 482 TGAACTCGACAAAACTACGGGTCTCATTAAGGTCGACCGTATTCTTTACTCATCTGTCGT 541 Query 522 ATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGA 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 ATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGA 601 Query 582 TGTTCTTGTCATTATGCAGGAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTAT 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 TGTTCTTGTCATTATGCAGGAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTAT 661 Query 642 TGGTCTGATGCCAATGATTGACCAGGGTGAGAAAGACGACAAGATTATTGCTGTCTGCGC 701 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 662 TGGTCTGATGCCAATGATTGATCAGGGTGAGAAAGACGACAAGATCATTGCTGTCTGCGC 721 Query 702 TGATGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGC 761 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 TGACGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGC 781 Query 762 TGAGATCCGCCGTTTCTTTGAAGACTATAAGAAAAACGAGAACAAGGAAGTAGCCGTTAA 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 TGAGATCCGCCGTTTCTTTGAAGACTATAAGAAAAACGAGAACAAGGAAGTAGCCGTTAA 841 Query 822 CGACTTCCTTCCTGCAACTGCAGCGTACGACGCAGTTCAGCATTCCATGGATCTCTATGC 881 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 842 CGACTTCCTTCCGGCAACTGCAGCCTACGACGCAGTTCAGCATTCCATGGATCTCTATGC 901 Query 882 AGACTACGTCGTGGAGAACCTAAGACGTTGAA--A--A------GC--T----------C 919 |||||||||||||||||||||||||||||||| | | || | | Sbjct 902 AGACTACGTCGTGGAGAACCTAAGACGTTGAATCACCACCTCAAGCAATGGAATGAAAGC 961 Query 920 --ACAACTGCATTTTTCATAAATATAAGTATACATATAAATGTCAGGCTTCCCAAAGGAT 977 ||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct 962 TCACAACTGCATTATTCACAAATATAAATATACATATAAATGTCAGGCTTCTCAAAGGAT 1021 Query 978 ATCTTTGT-GT--ATGTCCTCTGATGAATCCGTTAGATGATGCCGATAAT 1024 || ||||| || ||||||||||||||||||| ||||||||||||||||| Sbjct 1022 ATATTTGTTGTGTATGTCCTCTGATGAATCCGGTAGATGATGCCGATAAT 1071 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50183912853 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5