BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485777
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53830.1 | Symbols: | Regulator of chromosome condensation ... 1426 0.0
> AT3G53830.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:19940814-19943799 FORWARD LENGTH=1626
Length=1626
Score = 1426 bits (772), Expect = 0.0
Identities = 865/909 (95%), Gaps = 10/909 (1%)
Strand=Plus/Plus
Query 733 TCAGATATAGGACAGATTTGGGGTTGGGGATATGGAGGTGAAGGTCAACTAGGATTGGGT 792
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 688 TCAGATTTAGGACAGATTTGGGGTTGGGGATATGGAGGCGAAGGTCAACTAGGATTGGGT 747
Query 793 TCCCGGATTAAAATGGTGTCGTCTCCTCATCTAATACCTTGCCTTGAATCAACTGGATCT 852
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 748 TCCCGGATTAAAATGGTGTCATCTCCTCATCTAATACCTTGCCTTGAATCAATTGGATCT 807
Query 853 GGAAAAGAAAGATCTTTCATATTACATCAAGGAGGAACAACAACCACGTCTGCTCAAGTT 912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 808 GGAAAAGAAAGATCTTTCATATTACATCAAGGAGGAACAACAACCACGTCTGCTCAAGCT 867
Query 913 TCTAGAGAACCTGGTCGGTACATCAAGGCCATTTCTTGTGGCGGTCGTCATAGCGCAGCA 972
|||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 868 TCTAGAGAACCTGGTCAGTACATCAAGGCCATTTCATGTGGAGGTCGTCATAGCGCAGCA 927
Query 973 ATTACAGATGCTGGAGGGTTAATAACTTTTGGCTGGGGACTCTATGGACAGTGTGGCCAC 1032
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ATTACAGATGCTGGCGGGTTAATAACTTTTGGCTGGGGACTCTATGGACAGTGTGGCCAC 987
Query 1033 GGAAACACAAATTACCAGTTAAGGCCCATGGCTGTGTCATCAGTGAAGAGTGTTCGGATG 1092
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 988 GGAAACACAAATGACCAGTTAAGGCCCATGGCTGTGTCAGAAGTGAAGAGTGTTCGGATG 1047
Query 1093 GAAAGCGTAGCAGCTGGATTGTGGCACACTATTTGCATCTCTAGTGATGGTAAAGTGTAT 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 GAAAGCGTAGCAGCTGGATTGTGGCACACTATTTGCATCTCTAGTGATGGTAAAGTGTAT 1107
Query 1153 GCCTTTGGTGGAAACCAATTTGGGCAACTGGGAACTGGCACTGATCATGCTGAGATATTA 1212
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1108 GCCTTCGGTGGAAACCAATTTGGGCAACTGGGAACTGGTACTGATCATGCTGAGATATTA 1167
Query 1213 CCGAGGTTGCTGGATGGCCAGAATTTGGAGGGCAAACATGCGAAAGCAGTTAGTTGTGGC 1272
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1168 CCGAGGTTGCTGGATGGCCAGAATTTGGAGGGCAAACATGCAAAAGCAGTTAGTTGCGGC 1227
Query 1273 GCGCGGCATAGTGCGGTTTTGGCAGAAGATGGTCAGTTGCTATGCTGGGGATGGAACAAA 1332
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GCGCGACATAGTGCGGTTTTGGCAGAAGATGGTCAGTTGCTATGCTGGGGATGGAACAAA 1287
Query 1333 TATGGACAGCTGGGTCTAGGGGACACAAATGACCGGAACATTCCTACACAAGTCCAGCTT 1392
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1288 TATGGACAGCTGGGTCTAGGGGACACGAATGACCGGAACATTCCTACACAAGTCCAGCTG 1347
Query 1393 GATGGCTGCAGACTGAGAAAAGTGGCGTGTGGATGGTGGCATACATTACTACTAGCAGAT 1452
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1348 GATGGCTGCAGACTGAGAAAAGTGGCGTGTGGATGGTGGCATACATTGCTACTAGGAGAT 1407
Query 1453 TTACCCACTTGAGTTTTCTCAACCAATCACCAAATCCTC-GATAGACATTTCTGGGTTTT 1511
| |||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||
Sbjct 1408 TCACCCACTTGAGTTTTCCCAACCAATCACCAAATCCTCAGATACACATTTCCGGGTTTT 1467
Query 1512 TGCCTCTAGGTTTGACGCTGTACATACATACAGACAGGCTTTTTGCTGTGTATGTATTTT 1571
| || ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1468 -GTCTGTAGGTTTGACGATGTACATACA----GACAGGCTTTTTGCTGTGTATGTATTTC 1522
Query 1572 CTTCTTCAATCTTTCC-CCGTCTTCATGTTTTTTACTTAGGGAGAGAGCTTTGACTTTGT 1630
|||||| || | || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1523 CTTCTTTAA-CATTAATCCGTCTTCATGTTTTTTACTTAGGGGGAGAGCTTTGACTTTGT 1581
Query 1631 AGTT-TGTA 1638
| || ||||
Sbjct 1582 A-TTGTGTA 1589
Score = 1094 bits (592), Expect = 0.0
Identities = 659/692 (95%), Gaps = 2/692 (0%)
Strand=Plus/Plus
Query 1 ATGAATGGAAATATCGGAGGAAAGGTTCCGATTGGGGAATGTAAAGCGACTGTAGTTTAC 60
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGGGAATATTGTAGGAAAGGTTCCGATTGGGGAATGTAAAGCGACTGTAGTTTAC 60
Query 61 ATGTCCGGTTACTTACCAGGAGCTGCGCCGGAGAAATCCCCAATTCTCTCTCCTGTTCCC 120
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 61 ATGTCCGGTTACTTACCAGGAGCTGCGTCGGAGAAATCCCCGATTCTCTCCCCTGTTCCC 120
Query 121 GTGCGTTTACCGGCGGCTGTTCACGGAGGAGATTCATGGAAAGATGTATGTGGCGGCGGT 180
||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 121 GTGCGTTTATCGGCGGCTGTTCACGGTGGAGATTCGTGGAAAGATGTATGTGGTGGTGGT 180
Query 181 TGTGGATTCGCTATGGCTATTTCAGA-AAAGGGGAAGCTTATAACTTGGGGTTCTACTGA 239
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 TGTGGATTCGCTATGGCTATTTCAGAGAAAGGA-AAGCTTATAACTTGGGGTTCTACTGA 239
Query 240 TGATGAAGGACAGAGCTATGTGGCTTCTGGAAAGCATGGGGAAACTCCAGAGCTGTTCCC 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 240 TGATGAAGGACAGAGCTATGTGGCTTCTGGGAAGCATGGGGAAACTCCAGAGCCGTTTCC 299
Query 300 TCTTCCCACTGAGGCTCCAGTCGTTCAGGCTTCTTCAGGATGGGCACATTGTGCCGTTGT 359
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TCTTCCTACGGAGGCTCCAGTCGTTCAGGCTTCTTCAGGATGGGCACATTGTGCGGTTGT 359
Query 360 AACAGAGACTGGTGAAGCATTTACTTGGGGTTGGAAGGAGTGCATTCCATCAAAGGATAC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 AACAGAGACTGGTGAAGCATTTACTTGGGGTTGGAAGGAGTGCATTCCATCAAAGGATCC 419
Query 420 TGTTGGAAAGCAGCAGAGTGGCTCTAGTGAGCAAGGTGAGATCGCATCACAAGGTTCAAA 479
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 420 TGTTGGAAAGCAGCAGAGTGGCTCAAGTGAGCAAGGTGATATCGCATCACAAGGTTCAAA 479
Query 480 TACAGCTAGTGGTATGACACTACAGAATGAGACCCGAAAGGTAGGGGAGGAATCGGTGAA 539
| | |||||||||| ||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 480 TGCGGCTAGTGGTACGACACTACAGAATGAGAACCAAAAGGTAGGGGAGGAATCAGTGAA 539
Query 540 GCGGAGACGGGTTTCAACTGCCAAAGATGAAACCGAAGGCCATACATCTGGAGGCGACTT 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GCGGAGACGGGTTTCAACTGCCAAAGATGAAACTGAAGGCCATACATCTGGAGGCGACTT 599
Query 600 CTTTGCTACAACACCTTCGCTTGTGAGTGTTGGCCTTGGAGTGAAGATCACCAGTGTTGC 659
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 CTTTGCTACAACACCTTCACTTGTGAGTGTTGGCCTTGGAGTGAGGATCACCAGTGTTGC 659
Query 660 TACTGGTGGTCGGCATACTCTGGCATTGTCAG 691
|||||||||||||||||| |||||||||||||
Sbjct 660 TACTGGTGGTCGGCATACGCTGGCATTGTCAG 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83182303065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5