BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485801
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54050.1 | Symbols: HCEF1 | high cyclic electron flow 1 | ch... 2176 0.0
> AT3G54050.1 | Symbols: HCEF1 | high cyclic electron flow 1 |
chr3:20016905-20018780 FORWARD LENGTH=1553
Length=1553
Score = 2176 bits (1178), Expect = 0.0
Identities = 1385/1481 (94%), Gaps = 29/1481 (2%)
Strand=Plus/Plus
Query 1 CCAAAACCAAACCTTGCAAAGtttttttCAGAAGC-AGACACAAAAAATGGCAGCAACCG 59
||||||||||||||| |||||||||||||| || | | ||| ||||||||||||||||||
Sbjct 1 CCAAAACCAAACCTTCCAAAGTTTTTTTCA-AAACAACACAGAAAAAATGGCAGCAACCG 59
Query 60 CCGCAACAACGACGTCGTCTCATCTTCTTCTCTCAAGCTCACGTCACTTGGCGGCATCGT 119
|||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
Sbjct 60 CCGCAACAACGACGTCGTCTCACCTTCTTCTCTCAAGCTCACGTCACGTGGCATCATCAT 119
Query 120 CTCAGCCTTCAATCCTTTTC-CCGAGATCTCTGTTCTCCAATAACGGGAAACGAGCAACT 178
| ||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||| |
Sbjct 120 CCCAGCCTTCAATCC-TTTCACCGAGATCTCTCTTCTCCAACAACGGGAAACGAGCACCA 178
Query 179 AGTGGA---AGAAACCATCATGT-TGGTG-GTGGAGTGAGGTGTATGGCGGTGGCGGCGG 233
| |||| || |||||||| || | | | ||||||||||||||||||| || |||||||
Sbjct 179 ACTGGAGTGAGGAACCATCA-GTAT-GCGAGTGGAGTGAGGTGTATGGCCGTAGCGGCGG 236
Query 234 ATGCTGCTGCGGCGGCAGAGACGAAACCAGCGGTAAGGAAGAAGAGTGGATACGAACTCC 293
|||||||| ||||||||| | |||| ||||||||||||||||||||||| |
Sbjct 237 ATGCTGCT---------GAGACGAAAACGGCGGCGAGGAAGAAGAGTGGATACGAACTTC 287
Query 294 AAACGTTGACGAGCTGGTTGTTGAGACAAGAGATGAAAGGAGAGATAGATGCAGAGCTGA 353
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 288 AAACGTTGACGGGCTGGTTGCTGAGACAAGAGATGAAAGGAGAGATAGATGCAGAGCTGA 347
Query 354 CGATAGTGATGTCGAGTATATCTA-TGGCTTGTAAACAGATCGCTTCACTTGTTCAACGT 412
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 348 CGATAGTGATGTCGAGTATATC-ATTGGCTTGTAAGCAGATCGCTTCACTTGTTCAACGT 406
Query 413 GCCGGAATATCTAATCTCACCGGAGTTCAAGGCGCCGTTAATATCCAGGGAGAGGATCAG 472
|||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 407 GCCGGAATCTCTAACCTGACCGGAGTTCAAGGCGCCGTTAATATTCAGGGAGAGGATCAG 466
Query 473 AAGAAGCTTGACGTCATCTCTAATGAGGTGTTTTCCAACTGCTTGAGATCAAGTGGAAGA 532
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 467 AAGAAGCTTGACGTCATCTCTAATGAGGTGTTTTCCAACTGTTTGAGATCAAGTGGAAGA 526
Query 533 ACGGGAATCATTGCCTCGGAGGAAGAGGACGTGCCAGTAGCGGTGGAGGAGAGTTACTCC 592
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 527 ACGGGAATCATAGCCTCGGAGGAAGAGGACGTGCCAGTTGCGGTGGAGGAGAGTTACTCC 586
Query 593 GGCAACTACGTCGTCGTGTTTGACCCTCTTGACGGTTCCTCCAACATTGACGCTGCTGTC 652
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 587 GGCAACTACGTCGTCGTGTTTGACCCTCTTGATGGTTCCTCCAACATTGACGCTGCCGTC 646
Query 653 TCTACCGGTTCTATCTTCGGTATCTATAGCCCCAATGACGAATGTATTGTCGACGACTCC 712
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 647 TCTACTGGTTCTATCTTCGGTATCTATAGCCCCAATGACGAATGCATTGTCGACGACTCC 706
Query 713 GACGATATCTCAGCTCTTGGGTCAGAAGAACAAAGGTGTATAGTAAACGTGTGCCAGCCA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GACGATATCTCAGCTCTTGGGTCAGAAGAACAAAGGTGTATAGTAAACGTGTGCCAGCCA 766
Query 773 GGGAATAACTTGCTAGCAGCCGGCTACTGTATGTACTCGAGCTCAGTTATCTTCGTTCTT 832
||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 767 GGGAACAACTTGTTAGCAGCCGGCTACTGTATGTACTCGAGCTCGGTCATCTTCGTTCTT 826
Query 833 ACTCTAGGCAAAGGCGTTTTCTCCTTCACGCTCGATCCAATGTACGGTGAGTTTGTCCTC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACTCTAGGCAAAGGCGTTTTCTCCTTCACGCTCGATCCAATGTACGGTGAGTTTGTCCTC 886
Query 893 ACGCAAGAAAACATTGAGATCCCCAAAGCCGGGAAAATCTACTCTTTCAACGAAGGAAAT 952
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 887 ACGCAAGAAAACATTGAGATCCCCAAAGCCGGGAGAATCTACTCTTTCAACGAAGGGAAT 946
Query 953 TACCAGATGTGGGACGGGAAGCTGAAGAAGTACATTGATGACCTCAAGGACCCTGGTCCA 1012
|||||||||||||||| || || ||||||||||||||||| || |||||||||||||||
Sbjct 947 TACCAGATGTGGGACGATAAACTAAAGAAGTACATTGATGATCTTAAGGACCCTGGTCCA 1006
Query 1013 AGTGGGAAACCTTACTCAGCAAGGTACATTGGAAGTTTGGTTGGAGATTTTCACAGGACT 1072
| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ACTGGGAAGCCTTACTCCGCAAGGTACATTGGAAGTTTGGTTGGAGATTTTCACAGGACT 1066
Query 1073 TTGTTGTATGGTGGGATTTACGGGTACCCTCGTGACGCGAAGAGCAAAAACGGAAAGCTT 1132
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1067 TTATTGTATGGTGGGATTTACGGGTACCCTCGTGACGCAAAGAGCAAAAATGGAAAACTT 1126
Query 1133 AGGCTTTTATATGAGTGTGCACCAATGAGTTTCATTGTTGAACAAGCTGGAGGGAAAGGT 1192
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 AGGCTGTTGTATGAGTGTGCACCAATGAGTTTCATTGTTGAACAAGCTGGAGGGAAAGGT 1186
Query 1193 TCTGATGGACAC-CAGAGAGTACTAGATATCCAACCGACGGAGATACATCAGAGGGTTCC 1251
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1187 TCTGATGGACATTC-GAGAGTACTAGATATCCAACCGACTGAGATACATCAGAGGGTTCC 1245
Query 1252 ACTATACATTGGAAGCACAGAGGAAGTAGAGAAGCTGGAGAAGTACTTGGCTTGACTCAT 1311
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1246 TCTATACATTGGAAGCACAGAGGAAGTAGAGAAGCTGGAGAAGTACTTGGCTTGAGTCAT 1305
Query 1312 GTACCAAACATAAGCCATTTAATTTCTATTGTAAGCCAATTTCTGACTACATGGTATATG 1371
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1306 GTACTAAACATAAGCCATTTAATTTCTATTGTAAGCCAGTTTCTGACTACATGGTATATG 1365
Query 1372 GAAATAGATGCATAATGGTGAAAGTCCTATTTTGTTGTCAATATCAATATAGAGAA-A-- 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1366 CAAATAGATGCATAATGGTGAAAGTCCTATTTTGTTGTCAATATCAATATAGAGAAGAAA 1425
Query 1429 TCAGCTGTTAAAACAATAGACCAA-AAACCCAAGTTTAATT 1468
|||||||||||||| ||||||||| ||||| ||||||||||
Sbjct 1426 TCAGCTGTTAAAACTATAGACCAAGAAACC-AAGTTTAATT 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5