BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485818
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54210.1 | Symbols: | Ribosomal protein L17 family protein ... 1236 0.0
> AT3G54210.1 | Symbols: | Ribosomal protein L17 family protein
| chr3:20067540-20068435 REVERSE LENGTH=818
Length=818
Score = 1236 bits (669), Expect = 0.0
Identities = 782/834 (94%), Gaps = 18/834 (2%)
Strand=Plus/Plus
Query 1 ATCCATTCGACTCCAGCAAAAT-CGCCTTTGTTGCAGAGAATCACACTCTAATGGCGATT 59
|||||||| || |||||||||| || ||||||||||||| |||||| |||||||||||||
Sbjct 1 ATCCATTCAACACCAGCAAAATCCG-CTTTGTTGCAGAGGATCACAATCTAATGGCGATT 59
Query 60 CCAATGTCCATGGCAATGGCGACTCCTACAGATTCCGTGAGCAGAGTTTGGAATATGTCT 119
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 60 CCAATGTCCATGGCAATGGCGACTCCTACAGATTCCGTGAGCAGAGTCTGGAGTATGTCT 119
Query 120 TCTCTCAAATCAGCTCTTCCCTCCGCCGCATCACTCCGATTACCTTTATCGTCTTCTCGC 179
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 120 TCTCTCAAATCAGCTCTTCCCTCCACCGCATCACTCCGATTACCTTCCTCGTCTTCTCGC 179
Query 180 CGTCCGGTCACTCTTCGTGTACCAAtctcttctccttcactcccatctttctccggtctc 239
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTCCGGTTACTCTTCGTCTCCCAATCTCTTCTCCTTCACTCCCATCTTTCTCCGGTCTC 239
Query 240 tctccggtcaatcctctcctctcAATTGGACTTCCAGATTGGCAGAGTTTTGAGAATGGG 299
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 240 TCTCCGGTCAATCCTCTCCTCTCAATCGGACTTCCAGATTGGCAAAGCTTTGAGAATGGA 299
Query 300 TTCAAAATTGTTGACGGTGGTGGTCGTGTCTACGCGATGAGACACGGAAGACGAGTTCCG 359
||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 300 TTCAAAATTGTTGACGGTGGTGGTCGTATCTACGCGATGAGACACGGACGACGTGTTCCG 359
Query 360 AAGTTGAACAGACCACCGGACCAGCGTAAAGCTCTAT-TGCGAGGACTCACGACTCAGCT 418
||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 360 AAGCTGAACAGACCACCGGACCAGCGCAAAGCTCT-TCTGCGAGGACTCACGACTCAGCT 418
Query 419 TCTTAAGCATGGGAGAATCAAGACGACTCGAGCTAGAGCTAGTGCGATGAGGAAGTTCGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTAAGCATGGGAGAATCAAGACGACTCGAGCTAGAGCTAGTGCGATGAGGAAGTTCGT 478
Query 479 TGACAAGATGATTACATTGGCTAAAGACGGTTCGTTGCATAAGCGAAGACAAGCCTTGGG 538
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 TGACAAGATGATTACATTGGCTAAAGACGGTTCGTTGCACAAGCGAAGACAAGCCTTGGG 538
Query 539 ATATATCTACGAGAAGCAGATTGTTCACGCTCTGTTTGCAGAGGTTCCTGATAGATACGG 598
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 ATATATCTACGAGAAACAGATTGTTCACGCTCTGTTTGCTGAGGTTCCTGATAGATACGG 598
Query 599 TGAGAGAAACGGTGGATACACGAGGATCATCAGAACTCTTCCAAGGAGAGGTGATAATGC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGAGAGAAACGGTGGATACACGAGGATCATCAGAACTCTTCCAAGGAGAGGTGATAATGC 658
Query 659 TCCAATGGCTTACATTGAGCTTGTCTAAGGTCAATTTCTCTGTTTCTTTAATTGCTAAAT 718
||||||||||||||||||||||||||||||||||| ||||| ||| ||| | ||| |||
Sbjct 659 TCCAATGGCTTACATTGAGCTTGTCTAAGGTCAATATCTCT-TTTATTT--T-GCTCAAT 714
Query 719 TGTTTGACTTTTGTTCTGTAATATCAATCTAAAAACAGTTGTTGATGCAGATATGAGATC 778
||||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct 715 TGTTTCACTTTTGCTCTGTAATAT---TG-AAAAACAGTTGTTGATGCAGATATGAGATC 770
Query 779 ATTTTGTTATGTTATTGAGAATTCGACTTGTTAAAAATGCTTTCTTTAGAGTTG 832
|||||||| ||| ||| ||| | ||| |||||||||||||||||||||||
Sbjct 771 ATTTTGTTTTGT----GAGC-TTCAA-TTGGTAAAAATGCTTTCTTTAGAGTTG 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5