BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485837 Length=1460 Score E Sequences producing significant alignments: (Bits) Value AT3G54360.1 | Symbols: | zinc ion binding | chr3:20128305-2013... 2002 0.0 > AT3G54360.1 | Symbols: | zinc ion binding | chr3:20128305-20131854 REVERSE LENGTH=1596 Length=1596 Score = 2002 bits (1084), Expect = 0.0 Identities = 1304/1403 (93%), Gaps = 43/1403 (3%) Strand=Plus/Plus Query 3 GACGACTTCTGTTTGCCCTTTCTCGAAAGCTGCTCGTCCTGACGATGCTTCCG-CTCGAA 61 |||||||||||||||||| |||||||||||||||||||||||||||| | || |||||| Sbjct 119 GACGACTTCTGTTTGCCCGTTCTCGAAAGCTGCTCGTCCTGACGATGGGT-CGACTCGAA 177 Query 62 AACAAGGCGATACGGCGGCTTCTGGTTGCCCTTTTTCTAAAGCTGCTCGTCCCGACGATG 121 |||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 178 AACAAGGCGAAATTACCGCTTCTGGTTGTCCTTTTTCTAAAGCTGCTCGTCCCGACGATG 237 Query 122 CTTCTGCTCGAAAACAAGGCGAAATTACGGCTTCTGGTTGCCCTTTTTCTAAAGCTGCTC 181 | ||||||||||| ||||| |||| ||||||||||||||||||||||||||| | || Sbjct 238 CCTCTGCTCGAAAGCAAGGGGAAACGACGGCTTCTGGTTGCCCTTTTTCTAAA--T-CT- 293 Query 182 GTCCTGATGATGCCTCTGCACGAAAGAAAGACGAAATTGCAACTAAAGGATGTCCCGAAC 241 | || | | | ||| ||| || || | | | | |||||||||||| |||| Sbjct 294 G--CT--CG-T--C-CTG-ACG-AA-AATG--G-----G--AGTAAAGGATGTCCTGAAC 333 Query 242 ACGAAGGAAAATTGAATAAGGACTCTACTGATTCTGCAACTGTGCCTGCCAAGTGCCCCT 301 | |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct 334 AAGAAGGAAACTTGAATAAGGACTCTACTGATTCTGCAACGGTACCTGCCAAGTGCCCTT 393 Query 302 TTGGTTATGACTCTCAAACATTCAAGCTTGGGCCTTTTAGCTGTATGCTATGTCAAGCAC 361 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 394 TTGGCTATGACTCTCAAACATTCAAGCTTGGGCCTTTTAGCTGTATGTTATGTCAAGCAC 453 Query 362 TTCTATATGAGAGCAGTAGATGTGTACCTTGCACACATGTGTTTTGCAAAGTGTGCTTAA 421 ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 454 TTCTATATGAGAGCAGTAGATGTGTGCCTTGCACACATGTGTTCTGCAAAGTATGCTTAA 513 Query 422 CACGGTTTAAGGACTGCCCTCTTTGCGGTGCTGACATTGAAAGTATTGAAGCTGATGAAA 481 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 514 CACGGTTTAAGGACTGCCCTCTATGCGGTGCTGACATTGAAAGTATTGAAGTTGATGAAA 573 Query 482 ACCTACAAAAGATGGTTGATCAATTTATTGAAGGCCATGCTAGAATCAAGAGATCTATCG 541 |||| || |||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 574 ACCTTCAGAAGATGGTTGATCAATTTATTGAAGGCCATGCTAGAATTAAGAGATCTGTCG 633 Query 542 TCAATGGAACAGAAAAAGAAGAGATTGAAAATGATAACAAAAAAGTGATTTACGCTGATG 601 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 634 TCAATGGAACAGAAAAAGAAGAGGTCGAAAATGATAACAAAAAAGTGATTTACGCTGACG 693 Query 602 TTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGGGCATTTAGTGCCCAAA 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 694 TTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGGGCATTTAGTGCCCAAA 753 Query 662 ATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGATATTCGGGATCAACTAG 721 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 754 ATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGACATTCGGGATCAACTAG 813 Query 722 GGAGGGAGGGCAATACACCAGAGTTGTGTTCACAGCTTGGTGCAGTCCTTGGCATGCTTG 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 GGAGGGAGGGCAATACACCAGAGTTGTGTTCACAGCTTGGTGCAGTCCTTGGCATGCTTG 873 Query 782 GTGACTGTAGCCGAGCGATGGGAGACTCAAGCTCTGCAGTCAAGCATTTTGAAGAGAGTG 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 874 GTGACTGTAGCCGAGCGATGGGAGACTCAAGCTCTGCAGTCAAGCATTTTGAAGAGAGTG 933 Query 842 TTGAATTCCTTATGAAACTGCCGTTGAATGATTTGGAGATTACACATACACTTTCTGTCT 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 934 TTGAATTCCTTATGAAACTGCCGTTGAATGATTTGGAGATTACACATACACTTTCTGTCT 993 Query 902 CACTCAATAAAATAGGAGATCTTAAATATTATGACGAAGATCTACAAGCTGCAAGGTCGT 961 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 994 CACTCAATAAAATAGGAGATCTAAAATATTATGACGAAGATCTACAAGCTGCAAGGTCGT 1053 Query 962 ATTATGATAGAGCTTTAAATGTCAGACGTGATGTAATGAAGCATCACCCAAATGCTCCTT 1021 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1054 ATTATGATAGAGCTTTAAATGTCAGACGTGATGCAATGAAGCACCACCCAAATGCTCCTT 1113 Query 1022 CACAAATTCTGGATGTGGCAGTTTCCTTAGCCAAAGTTGCGGATATAGACAGGACTCTAC 1081 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1114 CACAAATTCTGGATGTGGCTGTTTCCTTAGCCAAAGTTGCGGATATAGACAGGACTCTAC 1173 Query 1082 AAAATGAAGTTGCAGCAACAGATGGTTTCAAGGAAGGCATGAAACTGCTGGAATCTTTGA 1141 |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1174 AAAATGAAGTTGCAGCGACAGATGGGTTCAAGGAAGGCATGAGACTGCTGGAATCTTTGA 1233 Query 1142 AACTGGACTCTGAAGATTCTGCTCTCGAGCAACGACGGCTCTCTGTGCTGGAGTTCCTTA 1201 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1234 AACTGGACTCTGAAGATTCTGCTCTCGAGCAACGGCGGCTCTCTGTACTGGAGTTCCTTA 1293 Query 1202 AGAAGCAAGTAGAGTAGCCTGAACAGTATGCAGAAACTGCACTCTAAATCGATGCATGCT 1261 ||||||||||||| | || || | || |||||||||||||||| ||||||| ||| Sbjct 1294 AGAAGCAAGTAGAA-A-CC-GA----T--GCTGAAACTGCACTCTAAACCGATGCAGGCT 1344 Query 1262 TATGTACGTATATAGAAATTATACCTAAGCTCTCCTCTGTGGCATTTTGCTGAATAAAAG 1321 || |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | Sbjct 1345 TAAGTACGTATATAGAAATTATACCTAAGTTCTCGTCTGTGGCATTTTGCTGAATAAA-G 1403 Query 1322 AACGAGAAAGCAAAAAATGTTGTATTTGCGCTTAAGGGACAAAGAAACAGAGTGGTCTGT 1381 || || |||||| ||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1404 AA--AG----CAAAAA-TGTTGTATTTGCGCTCAAGGGACAAAGAAACAGAGTTGTCTGT 1456 Query 1382 ATGTTGTGAATTGTGATGGTTTT 1404 ||||||||||||||||||||||| Sbjct 1457 ATGTTGTGAATTGTGATGGTTTT 1479 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71987581530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5