BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485840 Length=1238 Score E Sequences producing significant alignments: (Bits) Value AT3G54390.1 | Symbols: | sequence-specific DNA binding transcr... 1506 0.0 > AT3G54390.1 | Symbols: | sequence-specific DNA binding transcription factors | chr3:20137741-20139142 REVERSE LENGTH=1341 Length=1341 Score = 1506 bits (815), Expect = 0.0 Identities = 930/985 (94%), Gaps = 10/985 (1%) Strand=Plus/Plus Query 167 CTTGTCTCTGTTTTAACTCACCTGAAGAAAAAATATATGGAGAACGGAGAATTTAACCAA 226 |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 244 CTTGTCTCTGTTTTTAGTCACCTGAAGAAAAAATATATGGAGAACGGAGAATCTAACCAA 303 Query 227 GAAAATCTCAAATCTCTCAACCACGACGAATCATC-TAAGAAACCCTCTGCTTCCTCCGT 285 |||||||||||||||||||||||||||||||| | |||||| || |||||||||||||| Sbjct 304 GAAAATCTCAAATCTCTCAACCACGACGAATC-GCTTAAGAAGCCATCTGCTTCCTCCGT 362 Query 286 CGTTGTGGATAGGTTAAAGCGTGATGAATGGAGCGAAGGAGCTGTTTCGAGTTTACTTGA 345 |||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| || Sbjct 363 CGTTGTAGATAGGTTAAAACGTGATGAATGGAGCGAAGGAGCTGTTTCGACTTTACTCGA 422 Query 346 AGCCTACGAGTCAAAATGGGTTCTCAGGAACAGAGCCAAGCTCAAGGGTCAGGACTGGGA 405 ||| || |||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct 423 AGCTTATGAGTCAAAATGGGTTCTCAGAAACAGAGCCAAGCTTAAGGGACAAGACTGGGA 482 Query 406 AGACGTGGCTAGACACGTGTCCTCACGCGCCACTCAAACCAAGTCTCCGAAGACTCAAAC 465 ||||||||||| |||||||||||||||||||||||| |||||||| || |||||||| || Sbjct 483 AGACGTGGCTAAACACGTGTCCTCACGCGCCACTCACACCAAGTCACCAAAGACTCAGAC 542 Query 466 ACAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 525 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 TCAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 602 Query 526 TGATGGCTCCTCTTGGCCTCTTTATTCTCGTCTTGATCATCTCCTCCGTGGAACTCAAG- 584 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || Sbjct 603 TGATGGCTCCTCTTGGCCTCTTTATCCTCGTCTTGATCATCTCCTACGTGGAACTC-AGC 661 Query 585 CTCAAG-CTCAGCCTCAGGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTC 643 ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 662 CTC-AGCCTCAGCCTCAAGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTT 720 Query 644 GAGCCGCCGTCGCCTGTGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 703 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GAGCCGCCGTTGCCTGCGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 780 Query 704 GGCAAGATTCCTAAGGAAGATGGATTCAAGCCGGAGCAA-AAGCCGGAAAAAG-CGACGG 761 |||||||||||||||||||| ||||||||||||||| || || |||||||||| | ||| Sbjct 781 GGCAAGATTCCTAAGGAAGACGGATTCAAGCCGGAG-AACAAACCGGAAAAAGATG-CGG 838 Query 762 AGATGGACACAGACAGTAGTACGCCGGTGGTTAAAACgaaggtgagagggaagaaagtga 821 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 839 AGATGGATACAGACAGTAGTACGCCTGTGGTTAAAACGAAGGTGAGAGGGAAGAAAGTGA 898 Query 822 agagaagatataaagaagagaaggaagagaTCGCCGGAAGTATACGGTGGTTAGCGGAGG 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 AGAGAAGATATAAAGAAGAGAAGGAAGAGATCGCCGGAAGTATACGGTGGTTAGCGGAGG 958 Query 882 TGGtgatgagatctgagagagcaagaatggagacgatgaaagagatagagagaatgagag 941 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TGGTGATGAGATCAGAGAGAGCAAGAATGGAGACGATGAAAGAGATAGAGAGAATGAGAG 1018 Query 942 ctgaagctgaagctaagagaggagaaATGGATTTGAAACGAACGGAGATAATGGCGAATA 1001 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 1019 CTGAAGCTGAAGCTAAGAGAGGAGAATTGGATTTGAAACGGACGGAGATAATGGCGAATA 1078 Query 1002 CTCAGCTAGAGATTGCTAGACTCTTTGCAGTTGCAGCTTCGTCTGGACAGAACAAAGGTG 1061 |||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||| Sbjct 1079 CTCAGCTAGAGATTGCTAGAATCTTTGCTGCTGCAGCTTCTTCTGGACAGAACAAAGGTG 1138 Query 1062 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGttttttttATGGGAGACTCAAA 1121 |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 1139 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGCTTTTTATATTGGAGACTCAAG 1198 Query 1122 ATGTCGTGTGTACATACCAAGTGTT 1146 |||| |||||||||||||||||||| Sbjct 1199 ATGTTGTGTGTACATACCAAGTGTT 1223 Score = 265 bits (143), Expect = 9e-70 Identities = 164/174 (94%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1 TTAGCTTTAAGTCACGAGTCACGACCATTGAACATGCAAGAAACGCGTGTACCCAAACTC 60 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 40 TTAGCTTTAAGTCACGAGGCACGACCATTGAACATGCGAGAAACGCGTGTACCCAAACTC 99 Query 61 ATTGGTTAGTTTTGAGACCAGCAGCGAATTCTTACACAGTTCTCATATGTTAAACTCCAT 120 ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| Sbjct 100 ATTGGTTAGTTTTGAGAGCAGCAGCGTATTCTTACACAGTTCTCATATGTTTAACTCCAT 159 Query 121 TCACTCTCTCAAAAAGTTCCCATCTCTATCAAACGACTTGCTAAAA-CTTGTCT 173 |||||||||||||| |||||||||| ||||||| |||||||||||| ||| ||| Sbjct 160 TCACTCTCTCAAAAGGTTCCCATCTTTATCAAAAGACTTGCTAAAATCTTCTCT 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60843060540 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5