BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485842
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54420.1 | Symbols: ATEP3, ATCHITIV, CHIV, EP3 | homolog of ... 1338 0.0
> AT3G54420.1 | Symbols: ATEP3, ATCHITIV, CHIV, EP3 | homolog of
carrot EP3-3 chitinase | chr3:20145910-20147063 FORWARD LENGTH=876
Length=876
Score = 1338 bits (724), Expect = 0.0
Identities = 818/865 (95%), Gaps = 0/865 (0%)
Strand=Plus/Plus
Query 1 CTCAACAAAATCAAAATGTTGACTCACACAATTTCTAAAGCCATCTCTTTGGTAACCATT 60
|||||||| |||||||||||||||| ||| ||||||||| |||||||||| |||||||||
Sbjct 11 CTCAACAACATCAAAATGTTGACTCCCACCATTTCTAAATCCATCTCTTTAGTAACCATT 70
Query 61 CTATTAGCTCTACAAGCTTTCTATATCACAACAAAGGCTCAAAACTGCGGTTGTTCGTCA 120
||||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 71 CTATTAGTTCTACAAGCTTTCTCTAACACAACAAAGGCTCAAAATTGCGGTTGTTCGTCA 130
Query 121 GAGCTATGCTGTAGTCAGTTTGGCTTTTGCGGTAACACTTCAGACTATTGTGGTGTAGGT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 GAGCTATGTTGTAGTCAGTTTGGCTTTTGCGGTAACACTTCAGACTATTGTGGTGTAGGT 190
Query 181 TGCCAACAAGGGCCTTGTTTTGCTCCTCCTCCTGCTAATGGTGTGTCTGTGGCTGAGATT 240
||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 191 TGCCAACAAGGACCTTGTTTTGCTCCTCCCCCTGCAAATGGTGTCTCTGTGGCTGAGATT 250
Query 241 GTTACGCAAGATTTTTTCAATGGAATCATTAGTCAAGCCGCGTCTAGTTGCGCAGGCAAT 300
|| |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 251 GTAACGCAAGAATTCTTCAATGGAATCATCAGTCAAGCCGCGTCTAGTTGCGCCGGCAAT 310
Query 301 AGTTTTTACAGTCGAGGAGCTTTTCTTGAGGCCTTAGACTCATATTCTCGTTTCGGTAGA 360
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AGATTTTACAGTCGGGGAGCTTTTCTTGAGGCCTTAGACTCATATTCTCGTTTCGGTAGA 370
Query 361 GTTGGATCGACTGATGACTCTAGACGTGAGATCGCAGCGTTCTTTGCTCATGTTACGCAT 420
||||||||||| || |||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 371 GTTGGATCGACCGACGACTCTAGGCGTGAGATTGCAGCGTTCTTTGCTCATGTCACACAT 430
Query 421 GAAACTGGACATTTCTGCTACATAGAAGAGATAGACGGAGCCGCAAAGGATTACTGCGAC 480
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 431 GAAACAGGACATTTCTGCTACATAGAAGAGATAGACGGAGCCTCAAAGGATTACTGCGAC 490
Query 481 GAGAATTCAACGCAATATCCATGCAATCCTAACAAAGGCTATTACGGCCGCGGACCGATC 540
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 491 GAGAATGCAACACAATATCCATGCAATCCTAACAAAGGCTACTACGGCCGCGGACCGATC 550
Query 541 CAACTCTCTTGGAATTTCAACTACGGGCCAGCTGGAACCGCAATTGGTTTTGACGGCCTC 600
|||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 551 CAACTCTCTTGGAATTTCAACTACGGGCCAGCCGGGACAGCAATTGGTTTCGACGGCCTG 610
Query 601 AATGCACCGGAAACAGTAGCCACAGATCCGGTCATATCCTTCAAGACCGCCTTGTGGTAC 660
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 611 AATGCACCGGAAACAGTAGCCACGGATCCAGTCATATCCTTCAAAACCGCCTTGTGGTAC 670
Query 661 TGGACAAATCGGGTTCAGCCTGTTCTCTCTCAAGGTTTTGGTGCAACAATCCGAGCCATT 720
||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 671 TGGACCAATAGGGTTCAGCCTGTTATCTCTCAAGGTTTTGGTGCAACAATCCGTGCCATT 730
Query 721 AACGGTGCTTTAGAGTGCGACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTAC 780
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AACGGTGCTTTGGAGTGTGACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTAC 790
Query 781 TACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAACAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAACAA 850
Query 841 AAACATCTATTTCTTTGTATACATA 865
|||||||||||||| ||||||||||
Sbjct 851 AAACATCTATTTCTCTGTATACATA 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5