BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485870
Length=2012
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54660.1 | Symbols: GR, EMB2360, ATGR2 | glutathione reducta... 3077 0.0
> AT3G54660.1 | Symbols: GR, EMB2360, ATGR2 | glutathione reductase
| chr3:20229744-20233182 REVERSE LENGTH=2196
Length=2196
Score = 3077 bits (1666), Expect = 0.0
Identities = 1915/2032 (94%), Gaps = 29/2032 (1%)
Strand=Plus/Plus
Query 1 GAAGAAGAATCGTGGAGATGGCTTCGACTCCGAAGCTTACTAGTACAA-TT--TCATCTT 57
|||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||
Sbjct 66 GAAGAAGAATCGTGGAGATGGCTTCGACCCCGAAGCTTACCAGTACAATTTCATCATCTT 125
Query 58 CTCCATCTCTTCAAATCCTCTGCAAAAAGCTCCCAATCGCAATTCATCTACCATCATCTT 117
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 126 CTCCATCTCTTCAATTCCTCTGCAAAAAACTCCCAATCGCAATTCATCTACCATCATCTT 185
Query 118 CTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTGTTCTCTGCGTCCCC 177
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 186 CTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCC 245
Query 178 GTATCGCCGTACTCTCAAACCACCGGTATTACCACTCTCGTCGGTTTTCTGTTCGTGCCA 237
|||||||| |||||||||||||||| |||||||||||||| |||||||||||| ||||||
Sbjct 246 GTATCGCCCTACTCTCAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCA 305
Query 238 GTACCGATAACGGAGCTGACTCAGAGCGCCACTACGATTTTGATCTCTTCACTATCGGTG 297
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 306 GTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTATCGGTG 365
Query 298 CCGGAAGCGGCGGCGTCCGCGCTTCTCGCATCTCAACTAGCTTCGGTGCATCCGCCGCCG 357
|||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||
Sbjct 366 CCGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCG 425
Query 358 TTTGCGAGCTTCCTTTTTCCACCATCTCCTCTGATACAGCTGGAGGCGTCGGAGGAACGT 417
|||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||
Sbjct 426 TTTGCGAGCTTCCTTTTTCCACTATCTCTTCCGATACTGCTGGAGGCGTTGGAGGAACGT 485
Query 418 GTGTACTGAGAGGATGTGTTCCAAAGAAGTTGCTTGTGTATGCGTCCAAATACAGTCACG 477
||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 486 GTGTATTGAGAGGATGTGTACCAAAGAAGTTACTTGTGTATGCATCCAAATACAGTCATG 545
Query 478 AGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 AGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGA 605
Query 538 CTACTTTAATTGCTAACAAGAATGCTGAGTTGCAGCGGTTGACTGGTATTTATAAGAATA 597
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 606 CTACTTTGATTGCTAACAAGAATGCTGAGTTACAGCGGTTGACTGGTATTTATAAGAATA 665
Query 598 TACTTAGCAAAGCTAATGTCAAGTTAATTGAAGGTCGTGGAAAGGTTATAGACCCACACA 657
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 666 TACTGAGCAAAGCTAATGTCAAGTTGATTGAAGGTCGTGGAAAGGTTATAGACCCACACA 725
Query 658 CTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGAC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGAC 785
Query 718 GTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATGCCGCTCTTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 786 GTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATGCCGCGCTTG 845
Query 778 ATTTGCCTTCCAAGCCCAAGAAAATTGCAATTGTTGGTGGTGGCTACATAGCCCTGGAGT 837
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 846 ATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCCCTGGAGT 905
Query 838 TTGCGGGCATCTTTAATGGTCTTAACAGTGAAGTTCATGTATTTATAAGGCAAAAGAAAG 897
||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 906 TTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGGCAAAAGAAGG 965
Query 898 TTCTGAGGGGATTTGATGAAGACGTCAGGGATTTTGTTGGAGAGCAGATGTCTTTAAGGG 957
| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 966 TGCTGAGGGGATTTGATGAAGATGTCAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAG 1025
Query 958 GTATTGAGTTTCACACTGAAGAATCCCCTGAAGCCATCATCAAAGCTGGAGATGGATTAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1026 GTATTGAGTTTCACACTGAAGAATCCCCTGAAGCCATCATCAAAGCTGGAGATGGCTCGT 1085
Query 1018 TGTCTCTGAAGACCAGCAAGGGAACCGTTGAGGGCTTTTCGCATGTTATGTTTGCAACTG 1077
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1086 TCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTG 1145
Query 1078 GTCGCAAGCCAAACACAAAGAATTTAGGGTTGGAGAATGTTGGCGTAAAAATGGCGAAAA 1137
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1146 GTCGCAAGCCCAACACAAAGAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAA 1205
Query 1138 ATGGAGCAATAGAGGTTGACGAGTATTCACAGACCTCTGTTCCATCCATTTGGGCTGTTG 1197
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1206 ATGGAGCAATAGAGGTTGACGAATATTCACAGACATCTGTTCCATCCATCTGGGCTGTTG 1265
Query 1198 GGGATGTCACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGG 1257
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGGATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGG 1325
Query 1258 CTAAGACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGAGCTGTTCCCTGCGCCG 1317
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGAGCTGTTCCCTGCGCCG 1385
Query 1318 TTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGGCTATAGAACAAT 1377
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1386 TTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGGCCATAGAACAAT 1445
Query 1378 ATGGTGATGTCGATGTTTTCACATCAAACTTTAGGCCATTAAAGGCTACGCTTTCAGGAC 1437
|||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1446 ATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGAC 1505
Query 1438 TTCCAGACCGGGTGTTCATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTG 1497
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TTCCAGACCGAGTATTTATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTG 1565
Query 1498 TTCACATGTGTGGAGAGGATTCACCAGAAATCATCCAGGGATTTGGGGTTGCAGTTAAAG 1557
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TTCACATGTGTGGAGAAGATTCACCAGAAATCATCCAGGGATTTGGGGTTGCAGTTAAAG 1625
Query 1558 CTGGTTTAACTAAGGCCGACTTTGATGCAACAGTGGGTGTTCACCCCACAGCGGCTGAGG 1617
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1626 CTGGTTTAACTAAGGCCGACTTTGATGCTACAGTGGGTGTTCACCCCACAGCAGCTGAGG 1685
Query 1618 AGTTTGTCACTATGAGGACTCCAACCAGGAAAATCCGCAAAGACTCCTCTGAGGGAAAGG 1677
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1686 AGTTTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGGGAAAGG 1745
Query 1678 CAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGGTTGTATT 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1746 CAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGATTGTATT 1805
Query 1738 TACGGCATTGGAGCTCCCTGACAAGGAGAACATTGTGTCTGTGAAGAAGAAGAACttttt 1797
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1806 TACGGCATTGGAGCCCCCTGATAAGGAGAACATTGTGTCTGTGAAGAAGAAG--CTTTTC 1863
Query 1798 ttttttCTGGCAGAGAATAATTTTTGATAATGTCGCGTGGAGATATGATGGCCGACCTGC 1857
|||| ||||||||||| ||||| ||||||||| ||| ||||||||| || | |||||
Sbjct 1864 TTTT----GGCAGAGAATATTTTTTCATAATGTCGTGTGAAGATATGATCGCTGTCCTGC 1919
Query 1858 AATACTTTTGATCGGTTGACCTACGCGACCAAATTCCTCGAGAGAG-----------C-- 1904
|||||||||||||| ||||| || ||||||||||||||||||||| |
Sbjct 1920 AATACTTTTGATCGTTTGAC--ACACGACCAAATTCCTCGAGAGAGAGAGGTTGTAACTA 1977
Query 1905 ----GAAAGAGCTCTAAAAACTGAAGCTTTCAGTTCTTGTGACATCGTAAAGAAGGCTGT 1960
||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 1978 TTCCGAAAGAGCTCTAAAA-CTGAAGCTTTCAGTTCTTGTGACATCATAATGAAGGCTGT 2036
Query 1961 ATAGATAAAACAGTTTCGAGTTTTCTTTGGATTTGTAGtttttttCTTTTCT 2012
||||||| |||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 2037 ATAGATATAACAGTTTCGAGTTTTATTTGGATTTGTAGTATTTTTGTTTTCT 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99698282370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5