BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485877
Length=2253
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54720.1 | Symbols: AMP1, COP2, HPT, PT, MFO1 | Peptidase M2... 3535 0.0
AT5G19740.1 | Symbols: | Peptidase M28 family protein | chr5:6... 126 8e-28
> AT3G54720.1 | Symbols: AMP1, COP2, HPT, PT, MFO1 | Peptidase
M28 family protein | chr3:20254725-20257848 REVERSE LENGTH=2278
Length=2278
Score = 3535 bits (1914), Expect = 0.0
Identities = 2147/2260 (95%), Gaps = 13/2260 (1%)
Strand=Plus/Plus
Query 1 ctctctctctctctctcCAATGTCACAGCCTCTCACCACCAGACCCACCGTCGCCGGAGT 60
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 15 CTCTCTCTCTCTCTCTGCAATGTCACAACCTCTCACCACCAGACCCACCGTTACCGGAAT 74
Query 61 CTCTATATTCCCTTTCCGACAACCGCCGCCGCTCTGTGCTTTCCTATTCGTCATCGTTCT 120
|||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 75 ATCTATAATCCCTTTCCGACAACCGCCGCCTCTCTGTTCTTTCCTCTTCGTCATCGTTCT 134
Query 121 TTTCGTCGCTACTTTCTACACTCTCCATCACCCAGACGCCGTTACTCCTTCTCTTCTGTT 180
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 135 TTTCGTCGCCACTTTCTACACTCTCCATCATCCAGACGCCGTTACTCCTCCTCTTCTATT 194
Query 181 TTCTCGAAATTCCCATAATGCCCTCCGTCTCCACCGCCTCTTCCTCTCCTCTGCTTCCAA 240
|||||||||| || |||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 195 TTCTCGAAATGCCTATAATGCCCTTCGTCTCCGCCGCCTCTTCCTCTCCTCTGCTTCTAA 254
Query 241 CGCCACCATCTCCTCTTACCTCCGAGAATTGACCCGTCATCCTCACCTCGCCGGAACTAA 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 255 CGCCACCATCTCCTCTTACCTCCGTGAATTGACCCGTCATCCTCACCTCGCCGGAACTAA 314
Query 301 ACCCTCTTTAGA-A-ACTCTCAACTACGTC-CAAAGCCATTTCAAAAGCCTCGGACTTGA 357
|||||||||||| | ||| || |||||||| || ||||||| ||||||||||||||||
Sbjct 315 ACCCTCTTTAGACACACT-TC-ACTACGTCTTTAA-CCATTTCCAAAGCCTCGGACTTGA 371
Query 358 GACCCATGTCGCCGAATACGAAGCTCTCTTATCTTATCCTACGCACATCTCCGTCACGGC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GACCCATGTCGCCGAATACGAAGCTCTCTTATCTTATCCTACGCACATCTCCGTCACGGC 431
Query 418 GCGTTTTAGCAACACGACGACTCTTGAGTTTGACTTAAACGACGTTCCCGGAGATTCTCC 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 432 AAGTTTTAGCAACACGACGACTCTTGAGTTTGACTTAAACGACGTTCCCGGAGACTCTCC 491
Query 478 GGTCGTTAGGCCTTACCACGCTTACTCTCCATCTGGGTCGGCGCAAGGTAGCGTGGTTTT 537
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 492 GGTCGTTAGGCCTTACCACGCTTATTCTCCATCTGGGTCGGCGCAAGGTAACGTGGTTTT 551
Query 538 TGTGAATCACGGCGAGGAGAGAGACTATCATGCGCTTGAGTCGATTGGTGTGAGCGTTAA 597
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 552 CGTGAATCACGGCGAGGAGAGAGACTATCATGCGCTTGAGTCTATTGGTGTGAGCGTTAA 611
Query 598 AGGGTGTGTGGTTTTAGCGAGGAAAGGTGAAACCTTGGGAAGAGGAGGAATTGTTAAGAT 657
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||
Sbjct 612 AGGGTGTGTGGTTTTAGCGAGGAAAGGTGAAAACTTGGGAAGAGGAGCAATTGTGAAAAT 671
Query 658 AGCAGAAACTAAAGGTGCGCTGGGAGTGCTAATATACGCCGAGAATGACGGTGGCGGATT 717
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 672 AGCAGAAGCTAAAGGTGCGCTGGGAGTGCTAATATACGCCGAGAATGACGGTGGTGGATT 731
Query 718 TGGCGGGATTGAAAGAGGTACGGTTATGAGAGGAATCGGAGATCCGGTTAGTCCGGGTTG 777
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 732 TGGCGGGATTGAGAGAGGTACGGTTATGAGAGGAATCGGAGATCCGGTTAGCCCGGGTTG 791
Query 778 GCCCGGAGTCGTCGGAGGAGAAAAACTGAGCTTGGAAGATGAATTGGTCACTCGGAGATT 837
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 792 GCCCGGAGTTGTCGGAGGAGAAAAACTGAGCTTGGATGACGAATTGGTCACTCGGAGATT 851
Query 838 CCCCAAGATTCCATCTTTGCCTTTGTCTCTTCGTAATGCTGAGATCATTTTGGCTTCTCT 897
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TCCCAAAATCCCATCTTTGCCTTTGTCTCTTCGTAATGCTGAGATCATTTTGGCTTCTCT 911
Query 898 TGGCGGTGCTAGAGCTCCGTTGGAGTGGCGGAATTCGGGTCGGGTCGGATCGGGTCAACG 957
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 912 GGGCGGTGCTAGAGCTCCGTTGGAGTGGCGGAATTCGGGTCGTGTCGGACCGGGTCAACG 971
Query 958 GGTTGGCCCTGGACGGACGGTTATTAACATGACGTTTCAGGGGGAGATGAAAATGAAGAA 1017
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GGTTGGCCCTGGACGGATGGTTATTAACATGACGTTTCAGGGGGAGATGAAAATGAAGAA 1031
Query 1018 AATTCACAATGTTGTGGTTACCATAAGAGGAAGTGAAGAAGCGGATCGGTATGTGATTCT 1077
|||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||
Sbjct 1032 AATTAACAATGTTGTGGTTACAATAAGAGGGAGTGAAGAAGCGGATAGGTATGTGATACT 1091
Query 1078 TGGGAACCATAGAGACGCATGGACATATGGAGCTGTTGATCCAAACAGTGGAACTTCTGC 1137
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TGGGAACCATAGAGATGCATGGACATATGGAGCTGTTGATCCAAACAGTGGAACTTCTGC 1151
Query 1138 ATTACTTGACATTAGCCGACGATTCGCTCTGTTGCTTAAATCTGGTTGGAGACCACGTAG 1197
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1152 TTTACTTGACATTAGTCGACGATTTGCTCTTTTGCTTAAATCTGGTTGGAGACCACGTAG 1211
Query 1198 GACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTCGGAATGATTGGATCAACTGAATG 1257
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1212 GACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTTGGAATGATTGGATCAACTGAATG 1271
Query 1258 GGTTGAAGAAAATGTTCTTAACTTAGGTGCAAGTGCTGTGGCTTATCTTAATGTAGATTG 1317
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1272 GATTGAAGAAAATGTTCTTAACTTAGGTGCAAGTGCTGTTGCTTATCTTAATGTAGATTG 1331
Query 1318 TGCGGTCCAAGGCTCTGGtttttttGCTGGTGCAACTCCTCAATTAGACGGTCTTCTTGT 1377
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TGCAGTCCAAGGCTCTGGTTTTTTTGCTGGTGCAACTCCTCAATTAGACGGTCTTCTTGT 1391
Query 1378 AGATGTCTTAAAGCTGGTTCAGGATCCTGATGCAGTAGGCTTGACAGTGGAAGAGAC-TT 1436
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1392 CGATGTCTTGAAGCTGGTACAGGATCCTGATGCAGTAGGCTTGACAGTGGAAGAGACATT 1451
Query 1437 TCAAGTCTCAGAACAACATTATACAGAGGCTAAGTAGAGTTGATTCTGATTTTTCCAGTT 1496
| |||||||| || |||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 1452 T-AAGTCTCAAAATAACATTATTCAGAGGCTAAGTAGAGTAGATTCTGATTTTTCCGGTT 1510
Query 1497 TTCTTCACCATGCCGGGATACCGTCTATAGACATGTACTATGGAGCAGATTATCCTGTCT 1556
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 TTCTTCATCATGCCGGGATACCGTCTATAGACATGTACTATGGAGCAGATTATCCTGTCT 1570
Query 1557 ATCACACCGCATTTGACTCCTATGATTGGATGATCCACAATGCCGATCCATTGTTTCACC 1616
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1571 ATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCATTGTTTCACC 1630
Query 1617 GCCATGTTGCTATGGCTGGAATTTGGGGACTTTTAGGAATTATCTTGGCTGATGAGCCAC 1676
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1631 GTCATGTTGCTATGGCTGGAATTTGGGGACTTTTAGGAATTCTCTTGGCTGATGAGCCAC 1690
Query 1677 TGATACCATTCGATTACATCTCTTATGCAGAACAATTGCAGGTACATAGAGATACTCTGA 1736
| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1691 TCATACCATTCGATTACATCTCTTATGCAGACCAATTGCAGGCACATAGAGATAAACTGA 1750
Query 1737 GCAAGCTCTTAGAAGGGAAAGCCTCTGTTAATCCCTTGAGCATGGCGATACAAGAGTTCT 1796
||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||
Sbjct 1751 GCAAGCTCTTAGAAGGGAAAGTCTCTGTAAATCCCTTAAGCATGGCGATACAAGAGTTCT 1810
Query 1797 CTTTGGTTGCAAAAGAAGCCGCAGATGAAGCAAAGAAATTAAA-GGAGAAATCATATAGC 1855
|||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1811 CTTTGGTTGCCAAAGAAGCCGCAGATGAAGCAAAGAAGTTAAAGGGA-AAATCATATAGC 1869
Query 1856 AAAGATGATGTTGCAGCAGCTGCGAAGAGAAGAGAGCTAAATGACAGGTTGATGCTTGTA 1915
||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1870 AAAAATGATGTAGCAGCAGCGGCGAAGAGAAGAGAGCTAAATGACAGGTTGATGCTTGTA 1929
Query 1916 GAAAGAGGGTTTTTGGATGCAGAAGGGATCAAAGGGAAGGAATGGTTCAAGCATCTTGTG 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 GAAAGAGGGTTTTTGGATGCAGAAGGGATCAAAGGGAAGGAATGGTTCAAGCATCTTGTG 1989
Query 1976 TATGGACCAGCGGCTGAACCAGAGAGCAAGCTGGGATTTTTCCCGGGAATAGCAGATGCG 2035
|||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1990 TATGGACCGGCGGCTGAGCCAGAGAGCAAGCTAGGATTCTTCCCGGGAATAGCAGATGCC 2049
Query 2036 ATTGCGATAAACGCATCAGAGGGAGTAATTGAGCACGAGATATGGAGAGTCGCAAGAGCG 2095
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2050 ATTGCGATGAACGCATCAGAGGGAATAATTGAGCACGAGATATGGAGAGTCGCAAGAGCG 2109
Query 2096 ATTCAGAGAGCAAGCAAAGCTCTTAAAGGAGGGTTCACATGAGAAAATCTCAAAGAGTTC 2155
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2110 ATTCAGAGAGCAAGCAAAGCTCTTAAAGGAGGTTTCACATGAGAAAATCTGAAAGAGTTC 2169
Query 2156 TCTTTTGTGTATATATTGTGACTGTAGATTGTAGAAGAATAACGTATTATGAACTAATTT 2215
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 2170 TCTTTTGTGTATATATTGTGACTATAGATTGTAGAAGAATAACGTCTTATGAACTAATTT 2229
Query 2216 -CATAACCATTTATGAA-CTAAACACTATAATCTAATCAT 2253
|||||||||||||||| | ||||||||||||||||||||
Sbjct 2230 TCATAACCATTTATGAAAC-AAACACTATAATCTAATCAT 2268
> AT5G19740.1 | Symbols: | Peptidase M28 family protein | chr5:6673933-6676859
FORWARD LENGTH=2191
Length=2191
Score = 126 bits (68), Expect = 8e-28
Identities = 200/263 (76%), Gaps = 12/263 (5%)
Strand=Plus/Plus
Query 1067 TATGTGATTCTTGGGAACCATAGAGACGCATGGACATATGGAGCTGTTGATCCAAACAGT 1126
||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||
Sbjct 1032 TATGTGATTCTTGGGAACCATAGAGACGCTTGGACTTTTGGAGCTGTTGATCCGAACAGT 1091
Query 1127 GGAACTTCTGCA-TTACTTGACATTAGC-CGACGATTCGCTCTGTTGCTTAAATCTGGTT 1184
|| ||| | | | ||| | || ||| || | | || | | | | ||| ||| || |
Sbjct 1092 GGCACTGCGGTACTTA-TGGAGATT-GCACAAAGACTAGATAAGCTGCAGAAAAGAGGAT 1149
Query 1185 GGA-GACCACGTAGGACCATTCTCCTTTGTAGTTGGGATGCAGAAGAAT-TCGGAATGAT 1242
||| | || || ||||| ||| | || |||| ||||||||| || || | | || ||||
Sbjct 1150 GGAAG-CCTCGAAGGACGATTATTCTGTGTAATTGGGATGCTGAGGAGTAT-GGCCTGAT 1207
Query 1243 TGGATCAACTGAATGGGTTGAAGAAAAT-GTTCTTAACTTAGGTGCAAGTGCTGTGGCTT 1301
||| ||||| |||||||| ||||||||| | | ||| || | || || ||||| |
Sbjct 1208 TGGGTCAACAGAATGGGTAGAAGAAAATAGAGAG-ATGTTAAGTTCGAGAGCAGTGGCCT 1266
Query 1302 ATCTT-AATGTAGATTGTGCGGT 1323
| ||| |||||||||||||||||
Sbjct 1267 A-CTTGAATGTAGATTGTGCGGT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111796613715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5