BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485933 Length=853 Score E Sequences producing significant alignments: (Bits) Value AT3G55120.1 | Symbols: TT5, A11, CFI | Chalcone-flavanone isome... 1044 0.0 > AT3G55120.1 | Symbols: TT5, A11, CFI | Chalcone-flavanone isomerase family protein | chr3:20430114-20431470 REVERSE LENGTH=930 Length=930 Score = 1044 bits (565), Expect = 0.0 Identities = 721/796 (91%), Gaps = 12/796 (2%) Strand=Plus/Plus Query 1 TTATCAATCGAAATTCGAACCGACTCAATAATGTCTTTC-T-C-A----TCCGTCTCTCC 53 |||||||||||||||| ||||||||||| |||||| ||| | | | | || |||||| Sbjct 26 TTATCAATCGAAATTCCAACCGACTCAACAATGTC-TTCATCCAACGCCTGCGCCTCTCC 84 Query 54 GTCGCAGTTCCCCTCCGTCACGAAGCTTCAGGTCGACTCCGTCACGTTTGAT-CCGTCCG 112 ||| | ||||||| |||||||||||||||| || |||||||||||||||| | ||||||| Sbjct 85 GTCACCGTTCCCCGCCGTCACGAAGCTTCATGTAGACTCCGTCACGTTTG-TACCGTCCG 143 Query 113 TCAAGTCGCCTGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 172 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 TCAAGTCACCGGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTG 203 Query 173 ATATCCAAGGAAAATTCGTTATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 232 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 204 ATATCCAAGGTAAATTCGTGATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCG 263 Query 233 TTCCTTCACTCTCCCTTAAGTGGAAGGGCAAAACTACGGAGGAGCTAACAGAGTCGGTCC 292 ||||||| || || | ||||||||||| ||||||||||||||||||||||| || ||| Sbjct 264 TTCCTTCTCTATCTGTCAAGTGGAAGGGAAAAACTACGGAGGAGCTAACAGAATCTATCC 323 Query 293 CGTTCTTCCGTGAAATCGTCACAGGTGCGTTTGAGAAGTTTATCAAAGTGACGATGAAAC 352 |||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct 324 CGTTCTTCCGTGAAATAGTCACCGGTGCGTTTGAGAAGTTTATCAAGGTGACAATGAAAC 383 Query 353 TGCCGTTAACGGGACAACAATATTCCGAGAAAGTGACGGAAAACTGTGTGGCTATTTGGA 412 ||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||| Sbjct 384 TGCCGTTAACGGGACAACAATATTCGGAGAAAGTGACGGAGAATTGTGTGGCTATATGGA 443 Query 413 AATC-CTTAGGGATTTATACGGATTGTGAAGCCAAAGCTGTGGAGAAGTTTTTGGAGATC 471 || | |||||| |||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 444 AA-CAATTAGGGCTTTATACGGACTGTGAAGCTAAAGCTGTGGAGAAGTTCTTGGAGATC 502 Query 472 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCAACCGGC 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 503 TTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCTACCGGC 562 Query 532 TCTCTTACGGTTGCGTTTTCTAAAGATGATAGTATCCCTGAAACCGGGTTCGCTGTCATC 591 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 563 TCTCTTACGGTTGCGTTTTCGAAAGATGATAGTATCCCTGAAACCGGGATCGCTGTGATC 622 Query 592 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAGTCAATTATCGGGAAGAACGGAGTGTCG 651 |||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct 623 GAGAACAAATTGTTGGCGGAGGCGGTTCTGGAATCTATCATCGGGAAGAACGGTGTGTCA 682 Query 652 CCTGGGACTAGGTTGAGTATTGCAGAGAGATTAGCTAAACTGATGACGAAGAACAAGGTT 711 ||||| |||||||| ||| ||||||| |||||| || | || |||| ||||||||||| Sbjct 683 CCTGGCACTAGGTTAAGTGTTGCAGAAAGATTATCTCAGCTAATGATGAAGAACAAGGAC 742 Query 712 GAAGAGGACGCTAGCAATCACTCTATTGATGAGAAACTAGCCAAAGAGAACTGAGAATGA 771 ||| |||| | ||| |||||||| |||| || ||||||||||||||||||||||||||| Sbjct 743 GAAAAGGAAGTTAGTGATCACTCTGTTGAGGAAAAACTAGCCAAAGAGAACTGAGAATGA 802 Query 772 TAGATTTTTCTTGTGT 787 |||||||||||||||| Sbjct 803 TAGATTTTTCTTGTGT 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41593873716 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5