BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485945
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55240.1 | Symbols: | Plant protein 1589 of unknown functio... 959 0.0
> AT3G55240.1 | Symbols: | Plant protein 1589 of unknown function
| chr3:20473541-20474763 REVERSE LENGTH=681
Length=681
Score = 959 bits (519), Expect = 0.0
Identities = 632/681 (93%), Gaps = 30/681 (4%)
Strand=Plus/Plus
Query 1 TTTTAGAAAGAAGACTCTCTTCTAAGTTTGGGTGTTAATTCTAGGGTTTCCATTAACAAT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTAGAAAGAAGACTCTCTTTTAAGTTTGGGTGTTAATTCTAGGGTTTCCATTAACAAT 60
Query 61 GGCTGACTCTTCTTCTGCTTCTTACATTCACATGGTGCAGCACATGATAGAGAAATGTTT 120
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAGATTCTTCTTCTGCTTCTTACATTCACATGGTGCAGCACATGATAGAGAAATGTTT 120
Query 121 GATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCAC 180
Query 181 TCCTGTCATCACCTCTACTGTATGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCTGTCATCACCTCTACTGTGTGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAA 240
Query 241 GGCATATGAGGAGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGTATGAGGAGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT 300
Query 301 GATCCAGAAGATTATCTCGGATTCATCTAAAGAATCCGACGACTGATCGCGATGTTCG-T 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GATCCAGAAGATTATCTCGGATTCATCTAAAGAATCCGACGACTGATCGCGATGTTCGAT 360
Query 360 --T-AGATCTTT-AAAACCTTATAGTTTATATATATAAATCTCATGAAAACGATTTATCC 415
| |||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CGTTAGAT-TTCGAAAACCTTATAGTTTATATATATGAATCTCATGAAAACGATTTATCC 419
Query 416 CTGACGCATGCATGTTTATATGTAAATCGttttttttCATCTCTTGGCATCGGTCCAACA 475
|||||||||||||||||||| |||||||||||||| ||||| | | |||||||||||||
Sbjct 420 CTGACGCATGCATGTTTATAAGTAAATCGTTTTTT--CATCT-TAG-CATCGGTCCAACA 475
Query 476 AGAAAGACAGCaaaaaaaGG-GTGATGACACTCCTTTTGGTACGTTATACGTACGTGGTC 534
|| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 476 AGCAAGACAGCAAAAAAAGGAGTGATGACACTCTTTTTGGTACGTTATACGTACGTGGTC 535
Query 535 CACATAATATTGCCTTTGTATAATTA-ATATA-T-AA--------T-G---A-A-A-G-A 575
||||||||||||||| ||| |||||| ||||| | || | | | | | | |
Sbjct 536 CACATAATATTGCCTCTGTTTAATTATATATAATGAAACGGACGCTAGCTCATACATGGA 595
Query 576 TCGATGGTGTGGCGTTTTAATTGAATGTATCATGTGTATATATCTTCAAATAAACTATTT 635
|||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 596 TCGATGGTGTGGTGTTTTAATTGAATGTATCGTGTGTATATATTTTCAAATAAACTATTT 655
Query 636 ATCTCTGGTCTTGGTCACCTT 656
|| || ||| |||||||||||
Sbjct 656 ATTTCGGGTTTTGGTCACCTT 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5