BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485956 Length=921 Score E Sequences producing significant alignments: (Bits) Value AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:205138... 1393 0.0 > AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:20513825-20515351 REVERSE LENGTH=975 Length=975 Score = 1393 bits (754), Expect = 0.0 Identities = 849/892 (95%), Gaps = 18/892 (2%) Strand=Plus/Plus Query 1 ACTGAGAAAGAAGCGAATCCATAAGAGACGACAACAAAAGATC--TCTCTATACCACATA 58 ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1 ACTGAGAAAGAAGTGAATCCATAAGAGAAGACAACAAAAGATCTATCTCTATACCACATA 60 Query 59 TTACAC-TTTTCTCCAATGGCTTCTCTGAAGCTTTCACCTTCTTCTCCAATCTCCATCTC 117 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TTACACTTTTTCTCCAATGGCTTCTCTGAAGCTTTCACCTTCTTCTCCAATCTCCATTTC 120 Query 118 TAAGGTT-G-GTG-TTCCTTGCTCTAAGAAAGGACTTTCATTTCTTGTAAAAGCTGAGCA 174 ||||||| | ||| |||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 121 TAAGGTTGGTGTGATTCCTTCCTCTAAGAAAGGACTTTCATTTCTTGTAAAAGCAGAGCA 180 Query 175 CCATTCTTCGTCTTCCTCTTCTCATCTTCAAGATAAATGTCAGAGACGTCTGATTGTAAC 234 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCATTCCTCGTCTTCTTCTTCTCATCTTCAAGATAAATGTCAGAGACGTCTGATTGTAAC 240 Query 235 ATTTGGTGTTGTTGCTCCTTGGATCTCATTGCTTAGTAGAGCTCCACTATCATTTGCTGC 294 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 ATTTGGTGTTGTTGCTCCTTGGATCTCATTGCTTAGTAGAGCTCCATTATCATTTGCTGC 300 Query 295 AGAAAGCAAAAAAGGATTTCTTGCTGTCTCTGACAATAAAGATGCATATTCGTTTCTCTA 354 |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| Sbjct 301 AGAAAGCAAAAAAGGATTCCTTGCTGTCTCTGACAATAAAGATGCTTATGCGTTTCTCTA 360 Query 355 TCCATTTGGTTGGCAGGAAGTTGTGATTGAGGGTCAAGACAAGGTATACAAAGATGTGAT 414 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 361 TCCATTTGGTTGGCAGGAAGTTGTGATTGAAGGTCAAGATAAGGTATACAAAGATGTGAT 420 Query 415 TGAGCCTTTAGAAAGCGTTAGTGTCAATTTGATCCCAACTAGCAAACAGACTATTAAAGA 474 ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 421 TGAGCCTTTAGAAAGTGTTAGTGTGAATTTGGTCCCAACTAGCAAACAGACTATTAAAGA 480 Query 475 ATTTGGCCCTCCCAAGCAGATAGCTGAAACACTGATAAAGAAAGTTTTGGCACCTCCAAA 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATTTGGCCCTCCCAAGCAGATAGCTGAAACACTGATAAAGAAAGTTTTGGCACCTCCAAA 540 Query 535 TCAGAAAACAACCCTTATTGATGCATCAGAGCATGATGTCGATGGGAAGACTTATTACCA 594 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 541 TCAGAAAACAACCCTTATTGATGCATCAGAGCATGATGTCGATGGGAAGACTTATTATCA 600 Query 595 GTTTGAGTTCACTGTTCAGGCTAGAAACTACACCCGCCATGCTCTGGGTACAATCACGGT 654 |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct 601 GTTTGAGTTCACTGTTCAAGCTAGAAACTACACTCGCCATGCTCTGGGTACCATCACGGT 660 Query 655 TTTCAACGGAAAATTCTACACACTGACGACGGGAGCGAATGAGAGGAGGTGGGAGAAGAT 714 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 661 TTTCAACGGAAACTTCTACACACTGACGACGGGAGCGAATGAAAGGAGGTGGGAGAAGAT 720 Query 715 GAAAGATAGGCTTCACACTGTGGTAGATTCCTTCAAGATCACTGTTTGAAAATA----A- 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 721 GAAAGATAGGCTTCACACTGTGGTAGATTCCTTCAAGATCACTGTTTGAAAATACTGTAA 780 Query 770 TCAAGTTTGGTTTGGTTATCTCTTGTTTTGAAAAAGGCCATTTTCTTGTATTTTTGTCCA 829 ||||||||| ||||||| |||||||||||| |||||| |||||||||||||||| Sbjct 781 TCAAGTTTGCTTTGGTTGTCTCTTGTTTTGC------CCATTT-CTTGTATTTTTGTCCA 833 Query 830 TTCTTCTTCTCTCTTTCCCTTAACAATATTCTTTTCCTGTAAGAGAGATTCA 881 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 TTCTTCTTCTCTCTTTCCCTTAACAATATTCTTTTCCTGTAAGAGAGATTCA 885 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45009795712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5