BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485970
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55430.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2501 0.0
> AT3G55430.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr3:20549599-20552215 REVERSE LENGTH=1768
Length=1768
Score = 2501 bits (1354), Expect = 0.0
Identities = 1617/1740 (93%), Gaps = 34/1740 (2%)
Strand=Plus/Plus
Query 6 TATACACACGTATACGCCTAGACAAAACGGTCATATCTATT--TATTTA-T-TAATTTCT 61
|||||||||||||||| ||| |||||||||||||||||||| | |||| | ||| | ||
Sbjct 41 TATACACACGTATACG-CTATACAAAACGGTCATATCTATTAATTTTTATTATAAATACT 99
Query 62 AT-T--AT-A-AAT-AGTTTCTCGA-T-ATCGTCATAATAAAAACTCTACTCAAACGATT 113
| | || | ||| | || | | |||| ||||||||||| | ||||||||||||
Sbjct 100 TTCTCGATAAGAATAAAAAAATCTATTCGTCGTAATAATAAAAACACAACTCAAACGATT 159
Query 114 CACGGGTTTCACTTGGAATCGTTTGATTTTCTCGTTTCCGAAATATAATaaaaaaaTGGC 173
||||||||||||||||||||||||| ||||||| |||||| || || ||||||| |||||
Sbjct 160 CACGGGTTTCACTTGGAATCGTTTGGTTTTCTCATTTCCG-AA-AT-ATAAAAAGATGGC 216
Query 174 CAAAGCGCCACCGTCAATCTCTCTTCTCCTCCTCCTCTCCGCCGCCGTATTCCTCACCAT 233
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 217 CAAAGCGCCACCGTCAATCTCTCTTCTCCTCCTCCTCTGCGCCGCCGTATTCCTCACCAT 276
Query 234 CCCCGCCGTGATCTCCGCCATCGGTGTTAACTATGGAACTCTCGGGAACCTTCCACCACC 293
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 277 CCCCGCCGTGATCTCCGCCATCGGTGTTAACTACGGAACTCTCGGAAACCTCCCACCACC 336
Query 294 GACTCAAGTGGC-AAATTTCATCAAGACTCAAACTTCGATCGATAGCGTCAAGATCTTCG 352
|||||| ||||| || ||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 337 GACTCAGGTGGCTAACTTT-ATCAAGACACAAACTTCGATTGATAGCGTCAAGATCTTCG 395
Query 353 ATGTGAATCCCGATATCCTCCGTGCTTTCGCTGGAACTGGTATCTCCGTCGTCGTTACCG 412
||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||
Sbjct 396 ATGTGAATCCCGATATCCTACGTGCCTTCGCTGGAACTGGTATCTCCGTCGTTGTCACCG 455
Query 413 TTCCTAACGGCGATATTCCGGCGTTAGCTAACGGAAGACAAGCTCGTCGGTGGGTTTCGG 472
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 456 TTCCTAACGGTGATATTCCGGCGTTGGCTAACGGAAGACAAGCTCGTCGGTGGGTTTCGG 515
Query 473 CTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTCTGTCGGAAATGAGA 532
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 516 TTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTCAGTCGGAAATGAGA 575
Query 533 TTTTGCTCACCGGAGATAATAATATGATCAATAATCTCTTACCGGCGATGAGGAATCTTA 592
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 576 TTCTGCTCACCGGAGATAATAACATGATCAATAATCTCTTACCGGCGATGAGGAATCTTA 635
Query 593 ACAATGCTTTGGTTCGTGCTGGTGTCAGAGATGTTAAGGTCACAACCGCACACTCACTTA 652
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 636 ACAACGCTTTGGTTCGTGCTGGTGTCAGAGATGTTAAGGTTACAACCGCACACTCACTTA 695
Query 653 ACATCATAGCCTATGACCTGACCGGTGCACCTAGCAGCGGTAGATTCAGGCCGGGTTGGG 712
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 696 ACATCATAGCCTATGACCTGACCGGTGCACCAAGCAGCGGTAGATTCAGGCCGGGTTGGG 755
Query 713 ACAAGGGCATATTGGCTCCAATCCTAGCTTACCATCGCAGCACCAAGTCTCCTTTCATGG 772
|||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 756 ACAAAGGCATATTGGCTCCAATCCTAGCTTACCATCGCCGAACCAAGTCACCTTTCATGG 815
Query 773 TTAACCCGTACCCTTACTTTGGTTTTGACCCTAAAAACGTCAATTTCGCCATTTTCCGTA 832
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 816 TTAACCCGTACCCTTACTTTGGTTTTGACCCCAAAAACGTCAACTTCGCAATTTTCCGAA 875
Query 833 CACCGTACAAGGCAGTCCGTGACCCGTTCACCCGCCATGTCTACACCAACATGTTTGATG 892
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 876 CACCGTACAAGGCAGTCCGTGACCCGTTCACCCGCCACGTCTACACCAACATGTTTGATG 935
Query 893 CACTCATGGACTCGACTTATTCTGCCATGAAAGCTCTTGGATACGGTGATGTTAACATTG 952
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 936 CACTCATGGACTCGACATACTCAGCCATGAAAGCTCTTGGATACGGTGATGTTAACATTG 995
Query 953 TCGTTGGTGAGACGGGCTGGCCTTCTGCTTGTGATGCACCTTGGTGCTCGCCGGCTAATG 1012
||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 996 TCGTTGGCGAGACTGGCTGGCCATCTGCTTGTGACGCACCTTGGTGCTCGCCTGCGAATG 1055
Query 1013 CTGCTTGGTTCAACCTCAACATTATCAAACGTGCACAAGGCCAAGGGACACCTCTCATGC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CTGCTTGGTTCAACCTCAACATTATCAAACGTGCACAAGGCCAAGGGACACCTCTCATGC 1115
Query 1073 CTAAAAGAAGGTTTGAGACTTACATTTTCGGTCTCTTCAATGAAGAAGGCAAGCCCGGTC 1132
|||| ||| |||| ||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1116 CTAACAGACGGTTCGAGACATACATTTTCGGTCTCTTCAACGAAGAAGGCAAACCCGGTC 1175
Query 1133 CGACCGCAGAGCGTAATTGGGGACTTTTCCGAGCAGATTTCTCCCCGGTTTACGATGTTG 1192
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CGACCGCAGAGCGTAACTGGGGACTTTTCCGAGCAGATTTCTCCCCGGTTTACGATGTTG 1235
Query 1193 GTCTTCTCCGAAACGGACAAGGCGGTGGAGGCCGTCCAGCATTGCCCGCACCTAGTACTG 1252
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1236 GTCTTCTCCGAAACGGACAAGGCGGTGGAGGCCGCCCAGCATTGCCCGCACCTAGTACTG 1295
Query 1253 CCGGCGGTAAATGGTGTGTGGCCAGATC-GGCGGCAACGAATGCACAGCTGCAAGACAAC 1311
||||||||||||||||||| || || || || ||| |||||| | |||||||||||||
Sbjct 1296 CCGGCGGTAAATGGTGTGTAGCGAGGTCCGG-GGCGACGAATACTCAGCTGCAAGACAGT 1354
Query 1312 ATTAATTGGGTGTGTGGTCAGGGGGTTGATTGTAAACCGATCCAAGCTGGTGGTTCGTGC 1371
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1355 ATTAATTGGGTGTGTGGTCAGGGTGTTGACTGTAAACCGATCCAAGCTGGTGGTTCGTGC 1414
Query 1372 TTTAACCCGAGCAGTTTGAGGACGCACGCATCTTTTGTTATGAACGCTTATTTCCAGAGC 1431
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1415 TTTAACCCGAGCAGTTTGAGGACGCACGCATCTTTTGTTATGAATGCTTATTTCCAGAGC 1474
Query 1432 CACGGCCGCACTGACGGTGCTTGTAATTTCAGTGGAACTGGTATGGTCGTAGGGAACAAC 1491
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1475 CACGGCCGCACTGATGGTGCTTGTAACTTCAGTGGAACTGGTATGATCGTAGGGAACAAC 1534
Query 1492 CCAAGCAATGGTGCGTGTAAGTACTAAG-AGATTGTCTATGTCTATGTAGTAGCATTTGT 1550
|||||||||||||| ||||||||||||| ||||||||||||| | |||||| |||||
Sbjct 1535 CCAAGCAATGGTGCATGTAAGTACTAAGGAGATTGTCTATGT--A-GTAGTA---TTTGT 1588
Query 1551 CTGGAAAATCCTAACATAATGGTTCTGAGGAACTTTGGATTTGAGAGATCATCAGatttg 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1589 CTGGAAAATCCTAACATAATGGTTCTGAGGAACTTTGGATTTGAGAGATCATCAGCTTTG 1648
Query 1611 tgtttaatttcggattattctaattttaaggtttttt-gttaattctttttccgttaatt 1669
|||||||||||||||||| ||||||||||| |||||| ||||||| ||||| || | |||
Sbjct 1649 TGTTTAATTTCGGATTATCCTAATTTTAAGATTTTTTTGTTAATTATTTTTTCGCTGATT 1708
Query 1670 ccttttatttaaACTAAATAAAGTGGAACTTCTCATAAATTTTGCTTCAGCGGTACGCTT 1729
||||||||||||| |||| |||||||||| |||||| |||||||||||| |||||||
Sbjct 1709 CCTTTTATTTAAA-TAAA----GTGGAACTTC-CATAAAATTTGCTTCAGCGTTACGCTT 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85491528135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5