BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485976 Length=796 Score E Sequences producing significant alignments: (Bits) Value AT1G19080.1 | Symbols: TTN10, PSF3 | GINS complex protein | chr... 1195 0.0 AT3G55490.1 | Symbols: | GINS complex protein | chr3:20572024-... 1044 0.0 > AT1G19080.1 | Symbols: TTN10, PSF3 | GINS complex protein | chr1:6584241-6586517 FORWARD LENGTH=931 Length=931 Score = 1195 bits (647), Expect = 0.0 Identities = 725/762 (95%), Gaps = 7/762 (1%) Strand=Plus/Plus Query 1 GACCGCGAATTTAATCTCAAGGGTAAGGTGGTGTGGAGCCAGCCTTAGGGGATGGCCAAG 60 |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 114 GACCGCGAATTTAATCTCAAGGTTAAGGTGGTGTGGAATCAGCCTTAGGGGATGGCGAAG 173 Query 61 TATTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTGTTCCATAAA 120 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 174 TACTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTATTCCATAAA 233 Query 121 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 293 Query 181 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCA-CTTGAGACAAGCTGTTACCAT 239 |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| Sbjct 294 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCATCT-GAGGCAAGCTGTTACCAT 352 Query 240 AAACCTTCCTCCCTGCTTCGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCAGCATA 299 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct 353 AAACCTTCCTCCCTGTTTTGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCTGCATA 412 Query 300 CGTCGATCTTAGATCTCGCTGTCCTTATTTTTATGAATTCGGATGCAAGTTAGAGCCACT 359 ||||||||||||||| || ||||| || ||||||||||| ||||||||| |||||||||| Sbjct 413 CGTCGATCTTAGATCGCGATGTCCATACTTTTATGAATTTGGATGCAAGATAGAGCCACT 472 Query 360 GGTTACAGATAGAACACTTGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 419 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 473 GGTCACAGATAGAACACTGGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 532 Query 420 GGCACTAACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 479 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 GGCACTGACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 592 Query 480 GACAAAAGAAGAAACAAACTTGTATGAAGCAGCACACTTGTCGATGACAGCCTTCAAGAA 539 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 593 AACAAAAGAAGAAACAAACTTGTATGAAGCAGCTCACTTGTCGATGACAGCCTTCAAGAA 652 Query 540 GTGGAGAACAGGTGGACCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 599 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GTGGAGAACAGGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 712 Query 600 TTCTGATTAAGTACCCTAAAACTCTTTATCCTCATCCTTACCAATAGGGTGGTTGTGTTA 659 |||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 713 TTCTAATTAAGTTCCCTAAAACTCTTTATCCTCATCCTTACCAAGAGGGTGATTGTGTTA 772 Query 660 TGTAAGTTATAACATGTCAAAATGATGCAACGGCAACACATTTGATTATGGTCTGAATCA 719 | | |||||||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct 773 TATTAGTTATAACATGTCAAAATGATGCAATGGCAACA--T---ATTATGGTCTGAATCA 827 Query 720 AATTGCAAATCCTTTTGTGTTATGTTCTCTTTAGTAAACTCA 761 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 828 AATTGCAAATCCTTTTGTGTTATGTTCTCTTCAGTAAACTCA 869 > AT3G55490.1 | Symbols: | GINS complex protein | chr3:20572024-20573682 REVERSE LENGTH=816 Length=816 Score = 1044 bits (565), Expect = 0.0 Identities = 686/742 (92%), Gaps = 17/742 (2%) Strand=Plus/Plus Query 1 GACCGCGAATTTAATCTCAAGGGTAAGGTGGTGTGGAGCCAGCCTTAGGGGATGGCCAAG 60 ||||||||||||||||| |||| |||||||||||| | |||| |||||||||||| ||| Sbjct 61 GACCGCGAATTTAATCTGAAGGTTAAGGTGGTGTGAAATCAGCGTTAGGGGATGGCGAAG 120 Query 61 TATTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTGTTCCATAAA 120 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 TACTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTATTCCATAAA 180 Query 121 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 240 Query 181 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCACTTGAGACAAGCTGTTACCATA 240 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 241 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCATTTGAGGCAAGCTGTTACCATA 300 Query 241 AACCTTCCTCCCTGCTTCGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCAGCATAC 300 |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 AACCTTCCTCCCTGTTTTGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCTGCATAC 360 Query 301 GTCGATCTTAGATCTCGCTGTCCTTATTTTTATGAATTCGGATGCAAGTTAGAGCCACTG 360 |||||||||||||| || ||||| || ||||||||||| ||||||||| ||||||||||| Sbjct 361 GTCGATCTTAGATCGCGATGTCCATACTTTTATGAATTTGGATGCAAGATAGAGCCACTG 420 Query 361 GTTACAGATAGAACACTTGGGA-TCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 419 || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 GTCACAGATAGAACACT-GGGAATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 479 Query 420 GGCACTAACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 479 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGCACTGACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 539 Query 480 GACAAAAGAAGAAACAAACTTGTATGAAGCAGCACACTTGTCGATGACAGCCTTCAAGAA 539 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 540 AACAAAAGAAGAAACAAACTTGTATGAAGCAGCTCACTTGTCGATGACAGCCTTCAAGAA 599 Query 540 GTGGAGAACAGGTGGACCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 599 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GTGGAGAACAGGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 659 Query 600 TTCTGATTAAGTACCCTAAAACTCTTTATCCTCATCCTTA-CCAATAGGGTGGTTGTGTT 658 |||| ||||||| ||||| |||||||| | |||| ||| ||||||||||| |||| Sbjct 660 TTCTAATTAAGTTCCCTATAACTCTTTCTTATCATAATTATCCAATAGGGTGATTGT--- 716 Query 659 ATGTAAGTTATAACA-TGTCAAAATGATGCAAC-GGC-AACA--CATTTGATTATGGTCT 713 | | | | |||||| | ||||||||||| ||| || |||| |||||||||||||| | Sbjct 717 A-GCA--T-ATAACAATCTCAAAATGATGTAACTGGGTAACATACATTTGATTATGGT-T 771 Query 714 GAATCAAATTGCAAATCCTTTT 735 || |||||||||||| |||||| Sbjct 772 GAGTCAAATTGCAAA-CCTTTT 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38730527337 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5