BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485985
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55580.1 | Symbols: | Regulator of chromosome condensation ... 2148 0.0
> AT3G55580.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:20612700-20615920 FORWARD LENGTH=1723
Length=1723
Score = 2148 bits (1163), Expect = 0.0
Identities = 1361/1455 (94%), Gaps = 20/1455 (1%)
Strand=Plus/Plus
Query 1 ATGAATGGCGAGGGAAATTTGGAGACTGGTGGAACTAGCGCCGCCG---CACCAAAAGA- 56
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 67 ATGAATGGCGAGGGAAAATTGGAGACTGGTGGAACTAGCGCCGCCGCCACACCAAAAGAG 126
Query 57 G-G-A-G--G-AG--GAAGTTGTTGGTCAGAGAGTAGTGTACATGTGGGGTTACTTACCG 108
| | | | | || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 127 GAGAAGGAAGAAGAAGAAGTAGTTTCCCAGAGAGTAGTGTACATGTGGGGTTACTTACCC 186
Query 109 GGAGCTTCGCCGCAACGGTCTCCTCTGATGTCACCGGTCGAAGTGAAGATTCCTCCGGCT 168
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 187 GGAGCTTCACCGCAACGGTCTCCTCTGATGTCACCAGTCGAAGTAAAGATTCCTCCGGCA 246
Query 169 GTTGAAAGTTCCTGGAAAGATGTCTATGGTGGTGGATGCGGTTTCGCAATGGCTACTGCA 228
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 247 GTCGAAAGTTCATGGAAAGATGTCTCTGGTGGTGGATGCGGTTTCGCAATGGCTACTGCA 306
Query 229 GAGTCGGGGAAGCTAATTACATGGGGTTCGACAGATGATCTAGGTCAAAGCTATGTCACA 288
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 307 GAGTCAGGGAAGCTAATTACATGGGGTTCTACAGATGATCTAGGTCAAAGCTACGTCACA 366
Query 289 TCCGGCAAGCACGGTGAGACTCCAGAGCCATTTCCTCTTCCTCCAGAGGTTTGTGTACAG 348
|| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TCTGGGAAACACGGGGAGACTCCAGAGCCATTTCCTCTTCCTCCAGAGGTTTGTGTACAG 426
Query 349 AAAGCTGAGGCTGGATGGGCTCATTGTGTGGCAGTAACAGAGAATCAAGAAGTTTATACA 408
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 427 AAAGCTGAAGCTGGATGGGCTCATTGTGTGGCAGTAACAGAGAATCAACAAGTTTATACA 486
Query 409 TGGGGATGGAGGGAATGTATACCCACAGGGAGAGTGTTTGGACAAGCAGAGGGAGATTCG 468
|||||||||||||||||||||||||| |||||||| || ||||||| ||| ||||||||
Sbjct 487 TGGGGATGGAGGGAATGTATACCCACTGGGAGAGTCTTCGGACAAGTAGATGGAGATTCT 546
Query 469 TGTGAAAGAAACATTTCCTTCTCGACAGAGCAAGTGAGTCCCAGTTCTCAAGGGAAAAAA 528
|||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 547 TGTGAAAGAAACATATCGTTCTCGACAGAGCAAGTGAGTTCTAGTTCTCAAGGGAAAAAA 606
Query 529 TCTAACGGTGGAACGTCTTCTCAAGTTGAAGCTAGAGGT-GA----A-CCAACAAAGAAA 582
|||| ||||||||||||||||||||||||| ||||||| || | ||||||||||||
Sbjct 607 TCTAGTGGTGGAACGTCTTCTCAAGTTGAAGGTAGAGGTGGAGGGGAGCCAACAAAGAAA 666
Query 583 AGGCGGGTTTCACCGTCAAAGCAAGCTGCTGAAAATGCATCACAGTCTGACAACATTGAC 642
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 667 AGGAGGATTTCACCGTCAAAGCAAGCTGCTGAAAATTCATCACAGTCTGACAACATTGAC 726
Query 643 CTCTCGGCATTGCCTTGCCTTGTATCGTTGGCGCCTGGAGTTAGGATTGTCAGTGTTGCT 702
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 727 CTCTCGGCATTGCCTTGCCTTGTATCGTTGGCCCCAGGAGTTAGGATTGTTAGTGTTGCT 786
Query 703 GCTGGTGGACGTCATACTCTAGCATTATCAGATATTGGACAGGTGTGGGGTTGGGGTTAT 762
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GCTGGTGGTCGTCATACTCTAGCATTATCAGATATTGGACAGGTGTGGGGTTGGGGTTAT 846
Query 763 GGAGGAGAAGGACAGCTTGGATTGGGCTCCCGTGTGCGCCTAGTCTCCTCTCCTCATCCT 822
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 847 GGAGGAGAAGGACAGCTTGGATTGGGCTCTCGTGTACGTCTAGTCTCCTCTCCTCATCCT 906
Query 823 ATTCCATGCATTGAGCCTTCTTCTTATGGAAAAGCCACCAGTTCTGGTGTAAACATGAGT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 ATTCCATGCATTGAGCCTTCTTCTTATGGAAAAGCCACCAGTTCTGGTGTAAACATGAGT 966
Query 883 TCAGAAGTGCAATGCGCCCGAGTTCTTGGAAGTTATGTaaaaaaaaTTGCATGTGGAGGG 942
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TCAGTAGTGCAATGCGGCCGAGTTCTTGGAAGTTATGTAAAAAAAATTGCATGTGGAGGG 1026
Query 943 CGACACAGTGCTGTGATTACAGATACTGGAGCGCTCCTTACATTTGGTTGGGGGCTTTAT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CGACACAGTGCTGTGATTACAGATACTGGAGCGCTCCTTACATTTGGTTGGGGGCTTTAT 1086
Query 1003 GGACAGTGTGGCCAAGGAAGTACAGATGATGAACTAAGTCCTACATGTGTGTCGTCTTTG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GGACAGTGTGGCCAAGGAAGTACAGATGATGAACTAAGTCCTACATGTGTGTCGTCTTTG 1146
Query 1063 TTGGGAATCCGAATAGAAGAAGTGGCTGCAGGTCTATGGCACACGATCTGTGCTTCAGCT 1122
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 1147 TTGGGAATCCGAATAGAAGAAGTGGCTGCAGGTCTATGGCACACGACCTGCGCTTCATCG 1206
Query 1123 GATGGGGATGTATATTCGTTTGGTGGAAACCAATTTGGACAGTTAGGTACTGGTTGTGAT 1182
||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1207 GATGGTGATGTTTATGCGTTTGGTGGAAACCAATTTGGCCAGTTAGGTACTGGTTGTGAT 1266
Query 1183 CAAGCTGAGACTCTTCCAAAACTATTGGAGGCTCCAAACTTGGAAAATGTCAATGTAAAA 1242
|||||||||||||||||||||||||||||||||||||| |||||||| || || || |||
Sbjct 1267 CAAGCTGAGACTCTTCCAAAACTATTGGAGGCTCCAAATTTGGAAAACGTAAACGTCAAA 1326
Query 1243 ATCATCTCCTGCGGTGCTCGTCACACCGCTGTAATCGCAGATGAAGGGAAAGTATTCTGC 1302
| |||||||||||| ||||| ||||| ||||||||| |||||||||||| ||||||||||
Sbjct 1327 ACCATCTCCTGCGGGGCTCGCCACACAGCTGTAATCACAGATGAAGGGAGAGTATTCTGC 1386
Query 1303 TGGGGATGGAACAAATACGGGCAGTTGGGTTTAGGAGATGTGATAGACAGGAATGCTCCA 1362
|||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||
Sbjct 1387 TGGGGATGGAACAAATACGGACAGTTGGGTATAGGAGATGTGATTGACAGGAATGCACC- 1445
Query 1363 T-CAGAAGTCAGAATCAAAGATTGCGTCCCCAAAAACATTGCATGCGGTTGGTGGCATAC 1421
| |||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1446 TGCAGAGGTTAGAATCAAAGATTGCTTCCCCAAAAACATTGCATGCGGTTGGTGGCATAC 1505
Query 1422 TCTACTTCTAGGCCA 1436
||| |||||||||||
Sbjct 1506 TCTGCTTCTAGGCCA 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5