BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486011 Length=541 Score E Sequences producing significant alignments: (Bits) Value AT1G41880.1 | Symbols: | Ribosomal protein L35Ae family protei... 833 0.0 AT3G55750.1 | Symbols: | Ribosomal protein L35Ae family protei... 821 0.0 > AT1G41880.1 | Symbols: | Ribosomal protein L35Ae family protein | chr1:15651027-15652542 REVERSE LENGTH=729 Length=729 Score = 833 bits (451), Expect = 0.0 Identities = 515/545 (94%), Gaps = 8/545 (1%) Strand=Plus/Plus Query 1 TTTTTCTGTGTGGATTCGCTCGCCGGCATAAAAGAG-G--GGAAGAGGAAGAAGACAGTT 57 ||||||| |||| ||||||||| ||||||||||||| | ||||||||||| || || | Sbjct 43 TTTTTCTCTGTGAATTCGCTCGGCGGCATAAAAGAGAGTAAGAAGAGGAAGACGAGAG-T 101 Query 58 TGCAAGGATTGAAAATGAAGGGTCGTCAAGGAGAGAGAGTTAGATTGTATGTTCGAGGAA 117 | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 102 TACAAGGATTGAAAATGAAGGGACGTCAAGGAGAGAGAGTTAGATTGTATGTTCGTGGAA 161 Query 118 CAGTCCTCGGTTACAAGAGGTCCAAGTCCAACCAATATCCCAACACTTCTCTCATCCAGA 177 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 162 CAGTCCTCGGCTACAAGAGGTCCAAGTCGAACCAATATCCCAACACTTCTCTCATCCAGA 221 Query 178 TTGAAGGTGTGAACACTCAAGAGGAGGTTAACTGGTACAAGGGTAAGCGTTTGGCTTACA 237 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 222 TTGAAGGTGTGAACACTCAAGAGGAGGTCAATTGGTACAAGGGTAAGCGTTTGGCTTACA 281 Query 238 TCTACAAAGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 297 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TCTACAAGGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 341 Query 298 CTAGGCCTCATGGTAACAGCGGAGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCTA 357 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 342 CTAGGCCTCATGGTAACAGCGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCA 401 Query 358 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCAAGCAACATATGAG-AGGGCTAG 416 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| Sbjct 402 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCTAGCAACATATGAGGAGGA-TAG 460 Query 417 -TTTCAAGAACTATCGGAAGGAATCACCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 475 ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 461 ATTTCAAGAAGTATCGGAAGGAATCGCCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 520 Query 476 TTCACTTTTGTTCTAGACTCTCTGTTGGTTTTGATTTTATCTTTAGACCAAGTAAAACAA 535 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 521 TTCACTTTTGTTCTAAACTCTCTGTTGGTTTTGATTTTATCTTTAGACGAAGTAAAACA- 579 Query 536 TTTTT 540 ||||| Sbjct 580 TTTTT 584 > AT3G55750.1 | Symbols: | Ribosomal protein L35Ae family protein | chr3:20698553-20700067 FORWARD LENGTH=656 Length=656 Score = 821 bits (444), Expect = 0.0 Identities = 515/548 (94%), Gaps = 10/548 (2%) Strand=Plus/Plus Query 1 TTTTTCTGTGTGGATTCGCTCGCCGGCATAAAAGAG-G--GGAAGAGGAAGAAGACAGTT 57 ||||||| |||| | ||||||||||||||||||||| | |||||||||||||| || | Sbjct 16 TTTTTCTCTGTGAAATCGCTCGCCGGCATAAAAGAGAGTCAGAAGAGGAAGAAGAGAG-T 74 Query 58 TGCAAGGATTGAAAATGAAGGGTCGTCAAGGAGAGAGAGTTAGATTGTATGTTCGAGGAA 117 | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 75 TACAAGGATTGAAAATGAAGGGACGTCAAGGAGAGAGAGTTAGATTGTATGTTCGTGGAA 134 Query 118 CAGTCCTCGGTTACAAGAGGTCCAAGTCCAACCAATATCCC-AACACTTCTCTCATCCAG 176 |||||||||||||||||||||||||||| |||||||| ||| |||||||||||| ||||| Sbjct 135 CAGTCCTCGGTTACAAGAGGTCCAAGTCGAACCAATA-CCCTAACACTTCTCTCGTCCAG 193 Query 177 ATTGAAGGTGTGAACACTCAAGAGGAGGTTAACTGGTACAAGGGTAAGCGTTTGGCTTAC 236 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 194 ATTGAAGGTGTGAACACTCAAGAGGAGGTTAATTGGTACAAGGGTAAGCGTTTGGCTTAC 253 Query 237 ATCTACAAAGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTC 296 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 ATCTACAAGGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTC 313 Query 297 ACTAGGCCTCATGGTAACAGCGGAGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCT 356 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 314 ACTAGGCCTCATGGTAACAGTGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCC 373 Query 357 AAGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCAAGCAACATATGAG-AGGGCTA 415 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| Sbjct 374 AAGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCTAGCAACATATGAGGAGG-CTA 432 Query 416 G-TTTCAAGAACTATCGGAAGGAATCACCATTATCATTTCTCAGGAGCTGTAGTTT-ATC 473 | |||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 433 GATTTCAACAAGTATCGGAAGGAATCGCCATTATCATTTCTCAGGAGCTGTAGTTTTATC 492 Query 474 TATTCACTTTTGTTCTAGACTCTCTGTTGGTTTTGATTTTATCTTTAGACCAAGTAAAAC 533 ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 493 TATTCACTTTTATTCTAGACTCTCTGTTGGTTTTGATTTTATCTTGAGACGAAGTAAAAC 552 Query 534 AATTTTTT 541 | |||||| Sbjct 553 ATTTTTTT 560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25920819852 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5