BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486034
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55920.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1190 0.0
> AT3G55920.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:20743443-20745083 REVERSE
LENGTH=807
Length=807
Score = 1190 bits (644), Expect = 0.0
Identities = 712/743 (96%), Gaps = 12/743 (2%)
Strand=Plus/Plus
Query 1 GGAGTAATGGCGATTACGGCGACTAGATTGGTCTCTCTGACTCTCTTATGGATTGTCGTC 60
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 29 GGAGTAATGGCAATTACGGCGACTAGATTGGTCTCACTGACTCTCTTATGGATTGTCGTC 88
Query 61 CTCTTCGTCACACTTGCTCTCATTCAGATCAAATTGACTGATGTTGCGGATCCTAGTGTC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 89 CTCTTCGTCACACTTGCTCTCATTCAGATCAAATTGACTGATGTTGCAGATCCTAGTGTC 148
Query 121 AATGAGAATATTGTTGATGCTAAGCTCAATCAGGTGGGAGAGGATTTAGAAGGAGTAACC 180
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 149 AATGAGAAGATTCTTGATGCTAAGCTCAATCAGGTGGGAGAGGATTTAGAAGGAGTTACA 208
Query 181 CACAAAGTTTACTTTGACATTCAGATCAATGGTTCACCAGCAGGACGCATTCTCATCGGC 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 209 CACAAAGTTTACTTTGACATTCAGATCAATGGTTCACCAGCAGGGCGCATTCTCATCGGC 268
Query 241 CTTTTTGGGAAGATAGTTCCTAAAACTGCAGAGAACTTTCGAG-CACTTTGCACGGGAGA 299
|||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 269 CTTTTTGGAAATATAGTTCCTAAAACTGCAGAGAACTTTCG-GTCACTTTGCACGGGAGA 327
Query 300 GAAAGGAGTTGGAAACATGGGGAAACCTCTTTATTTCAAAGGAAGCAGCTTCCATAGGAT 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 328 GAAAGGAGTTGGAAACATGGGGAAACCTCTTTATTTCAAAGGAAGTAGCTTCCATAGGAT 387
Query 360 CATTCCTGGCTTCATGATTCAGGGTGGAGATTTTACACGAGGCGATGGGCGAGGTGGAGA 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 388 CATTCCTGGCTTCATGATTCAGGGTGGAGATTTTACACGAGGCGATGGACGAGGTGGAGA 447
Query 420 GTCGATATATGGTGATAAATTTGCAGATGAGAACTTTAAACTCAAACACACTGGGCCAGG 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GTCGATATATGGAGATAAATTTGCAGATGAGAACTTTAAACTCAAACACACTGGGCCAGG 507
Query 480 ATTTTTATCAATGGCAAACTCGGGACCAGATTCCAATGGTTCACAGTTCTTCATCACAAC 539
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 508 ATTTTTATCAATGGCAAACTCGGGACCAGACTCCAACGGTTCACAGTTCTTCATCACAAC 567
Query 540 AGTCACCACGAGTTGGTTGGACGGACATCACGTTGTGTTTGGGAAGGTATTGTCTGGCAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AGTCACCACGAGTTGGTTGGACGGACATCACGTTGTGTTTGGGAAGGTATTGTCTGGCAT 627
Query 600 GGAAGTAGTGCGCAAGATCGAAGCGCAGGGACAAGACAGTGGAGTGCCCAAAGG-ACATG 658
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 628 GGAAGTAGTGCGCAAGATCGAAGCCCAGGGACAAGACAGTGGAGTGCCCAAAGCTA-ATG 686
Query 659 TTATTGTTTTTGCTAGTGGAGAAGTTTCTTTGTAATATCGT-TT----TTT---CTTCAT 710
||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 687 TTATTATTTTTGCTAGTGGAGAAGTTTCTTTGTAATATCGTCTTCAAGTTTTTTCTTCAT 746
Query 711 CCGAATGAACAAGAGACCGAGAT 733
|||||||||||||||||| ||||
Sbjct 747 CCGAATGAACAAGAGACCAAGAT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5