BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486048
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56090.1 | Symbols: ATFER3, FER3 | ferritin 3 | chr3:2081404... 1395 0.0
AT2G40300.1 | Symbols: ATFER4, FER4 | ferritin 4 | chr2:1683129... 492 3e-138
> AT3G56090.1 | Symbols: ATFER3, FER3 | ferritin 3 | chr3:20814047-20816035
REVERSE LENGTH=1134
Length=1134
Score = 1395 bits (755), Expect = 0.0
Identities = 1001/1109 (90%), Gaps = 59/1109 (5%)
Strand=Plus/Plus
Query 1 ACAAAACCCTTTCTCCTCCAATCTCGTTGCTCACAAAGAAAGA-AAATATGCTTCTCAAA 59
|||||||||||||||||||||| |||| || ||| | |||| | ||| ||||||||||||
Sbjct 7 ACAAAACCCTTTCTCCTCCAATTTCGTCGCACAC-AGGAAA-ACAAA-ATGCTTCTCAAA 63
Query 60 GCTGCTTCTACTTTTTCTCTCTTGAACATTCATGGAGAGAAGAGAGACA----T-CTCTC 114
|||||||||||||| ||||| |||||||||||||||||||||| ||||| | |||||
Sbjct 64 GCTGCTTCTACTTTCTCTCTATTGAACATTCATGGAGAGAAGAAAGACATCTCTCCTCTC 123
Query 115 --CT-CT-CT--T-CTCCATTTCGTCTCCGATTTCTTCTGGAAAATCCGGGAATCTCTCG 167
|| || || | |||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 124 TTCTCCTCCTCCTCCTCCATTTCGTCTCCGGTTTCTTCTGGAAAATCCGGCAATCTCTCT 183
Query 168 TTCGCTCTTCGTGCTTCCAAGAG-T-------T----CAAGCACGTTGAGCGGCGTTGTG 215
||| ||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 184 TTCCCTCTTCGTGCTTCCAAGAGTTCAACCACTACCACAAGCACGTTGAGCGGCGTTGTG 243
Query 216 TTCGAGCCTTTCGAAGAGGTTAAGAAGGAGATGGATCTAGTTCCATCTGGTCAACAGCTT 275
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 TTCGAGCCTTTCGAAGAGGTTAAGAAAGAGATGGATCTAGTTCCATCTGGTCAACAGCTT 303
Query 276 TCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCTGCCGTCAATGAGCAGATCAAT 335
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 304 TCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCCGCCGTCAATGAGCAGATCAAT 363
Query 336 GTTGAATACAATGTGTCCTATGTCTATCACGCTTTGTATGCGTATTTCGATCGTGACAAC 395
||||| || || ||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 364 GTTGAGTATAACGTGTCGTATGTGTATCACGCTTTGTATGCATATTTCGATCGTGACAAC 423
Query 396 GTTGCCCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCCAGTGTGGAAGAACGCGAGCAC 455
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 424 GTTGCCCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCGAGTGTGGAAGAACGAGAGCAC 483
Query 456 GCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGGGAGAGTCAAGTTACAGCCCATG 515
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 484 GCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGGGAGGGTCAAGTTACAGCCCATG 543
Query 516 GTGCTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGGAGATGCTCTCTATGCCATGGAG 575
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 544 GTGTTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGGAGATGCTCTCTATGCTATGGAG 603
Query 576 TTGGCTCTATCATTGGAGAAACTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCT 635
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTGGCTCTTTCATTGGAGAAACTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCT 663
Query 636 TCGAAGAACGATGATGTCCAGTTGGCAGATTTTATTGAGAGTGTGTTTCTGAATGAACAG 695
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 664 TCCAAGAACGATGATGTCCAGTTGGCAGATTTTATTGAGAGTGTGTTTCTGAACGAACAG 723
Query 696 GTGGAAGCGATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGAAGACTCGGCAAAGGA 755
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 724 GTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGA 783
Query 756 CATGGAACATGGCATTTCGATCAGGAGCTTCTTGGTGCTGCTGCTTAATC-GAGTTTTAG 814
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 784 CATGGAACATGGCATTTCGATCAGGAGCTTCTTGGTGCTGCTGCTTAATCTGAGTTTTAG 843
Query 815 CTGTACTCTCGCAGTTTGGTTAACTTTGGAGTTATTTTGAGTATGAGATGTAACTTTTGA 874
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 844 CTGTAATCTCGCAGTTTGGTTAACTTTTGAGTTATTTTGAGTATGAGATGTAACTTTTAA 903
Query 875 GGTAGACTTGATTAATATCGTTTCTGTTGTGAGAGAAAACAAGCTATTA---T--TT--- 926
|||||| ||||| ||||||| |||||||||||||||||||||||||||| | ||
Sbjct 904 GGTAGATTTGATCAATATCGATTCTGTTGTGAGAGAAAACAAGCTATTACGCTCCTTGGG 963
Query 927 -T-AAGTAT-TATG-GTTTT--GTCC-AT--TTC-GT--A------A-TATCAGTTTCCT 967
| || | | | || ||||| || || || || | | ||||| ||||||
Sbjct 964 GTTAACTTTCTTTGTGTTTTCAGTATTATGGTTTTGTCCACTTCGTAATATCACTTTCCT 1023
Query 968 TTAGAACATTTCAAATCAGCCGTGGTTTTG-GGTATAATGTAATGGGCATTGATATT--C 1024
|||||||||||||||||||| || |||||| ||| ||||||||||| || ||||||| |
Sbjct 1024 TTAGAACATTTCAAATCAGCAGTTGTTTTGAGGTGTAATGTAATGGTCACTGATATTTTC 1083
Query 1025 TATCACCCCTGCATGAAAGTAGTATGTTT 1053
||| |||||||||||||||||||||||||
Sbjct 1084 TATTACCCCTGCATGAAAGTAGTATGTTT 1112
> AT2G40300.1 | Symbols: ATFER4, FER4 | ferritin 4 | chr2:16831293-16833280
REVERSE LENGTH=1054
Length=1054
Score = 492 bits (266), Expect = 3e-138
Identities = 542/673 (81%), Gaps = 27/673 (4%)
Strand=Plus/Plus
Query 132 TCTCCGA-TTTCTTCTGGAAAATCCGGGAATC-TCTCGTTCGCTCTTCGTGCTTCCAAGA 189
||| ||| ||||||||||||||| | |||| | | | ||| || |||| || || || |
Sbjct 174 TCTTCGAGTTTCTTCTGGAAAAT-CTGGAAACTTAACTTTCTCTTTTCGCGCATCTAAAA 232
Query 190 GTTC-A--A--G-CACGTTGAGCGGCGTTGTGTTCGAGCC-TTTCGAA-GAGGTTAAGAA 241
| || | | | | || | ||||||||||| |||||||| ||| || || || || ||
Sbjct 233 GCTCAACCACCGACGCGCTAAGCGGCGTTGTCTTCGAGCCGTTT--AAGGAAGTAAAAAA 290
Query 242 GGAGATGGATCTAGTTCC-ATCTGGTCAACAGCTTTCTCTTGCTCGTCATTTGTACTC-C 299
|||| | ||||| || || | | | || || || || || ||||| || ||||||
Sbjct 291 GGAGCTCGATCTCGTCCCTACCAGCTC-TCATCTCTCACTCGCTCGACAAAAGTACTCAG 349
Query 300 CCTGAGTGCGAAGCTGCCGTCAATGAGCAGATCAATGTTGAATACAATGTGTCCTATGTC 359
| ||||||||||| ||| | || |||||||||||||| ||||||||||| || |||||
Sbjct 350 AC-GAGTGCGAAGCCGCCATTAACGAGCAGATCAATGTGGAATACAATGTCTCGTATGTG 408
Query 360 TATCACGCTTTGTATGCGTA-TTTCGATCGTGACAACGTTGCCCTCAAGGGTCTCGCCAA 418
||||||||| ||||||| || ||| ||||| || ||| | || ||||| ||||| |||||
Sbjct 409 TATCACGCTATGTATGCTTACTTT-GATCGGGATAACATCGCGCTCAAAGGTCTTGCCAA 467
Query 419 GTT-TTTCAAGGAATCCAGTGTGGAAGAACGCGAGCACGCTGAGCTGTTGATGGAGTATC 477
||| ||| |||||||| ||| |||||||| | ||||| |||||| ||| ||||||||||
Sbjct 468 GTTCTTT-AAGGAATCAAGTTTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTATC 526
Query 478 AGAACAAACGTGGTGGGAGAGTCAAGTTACAGCCCATGGTGCTGCCTCAGTCTGAGTTTG 537
||||||||||||||||||| || ||||||||| |||| || |||||| || |||||||
Sbjct 527 AGAACAAACGTGGTGGGAGGGTTAAGTTACAGTCCATTGTAATGCCTCTTTCAGAGTTTG 586
Query 538 ATCATCCTGAGAAAGGAGATGCTCTCTATGCCATGGAG-TTGGCTCTATCATTGGAGAAA 596
| ||| ||| |||||||||||||| |||| ||||||| ||| |||| ||| ||||||||
Sbjct 587 AACATGTTGACAAAGGAGATGCTCTTTATGGCATGGAGCTTG-CTCTGTCACTGGAGAAA 645
Query 597 CTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCTTCGAAGAACGATGATGTCCAG 656
||||| ||||| |||||| ||||||| |||||||| |||||||||||| ||||||||||
Sbjct 646 CTAGTTAATGAGAAGCTCTTAAACCTTCACAGTGTTGCTTCGAAGAACAATGATGTCCAC 705
Query 657 TTGGCAGATTTTATTGAGAGTGTGTTTCTGA-ATGAACAGGTGGAAGCGATTAAGAAAAT 715
|||||||||||||||||||| | |||||||| | || ||||||||||| || ||| ||
Sbjct 706 TTGGCAGATTTTATTGAGAGCGAGTTTCTGACA-GAGCAGGTGGAAGCAATCAAGTTGAT 764
Query 716 CTCAGAATATGTTTCTCAACTTAGAAGACTCGGCAAAGGACATGGAACATGGCATTTCGA 775
|||||||||||| ||||||| || || | ||||||||||| ||||||||||||||| |
Sbjct 765 CTCAGAATATGTGGCTCAACTGCGACGAGTTGGCAAAGGACACGGAACATGGCATTTCAA 824
Query 776 TCAGGA-GCTTCT 787
|||| | ||||||
Sbjct 825 TCAG-ATGCTTCT 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5