BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486058
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56170.1 | Symbols: CAN | Ca-2+ dependent nuclease | chr3:20... 1901 0.0
AT2G40410.2 | Symbols: | Staphylococcal nuclease homologue | c... 728 0.0
> AT3G56170.1 | Symbols: CAN | Ca-2+ dependent nuclease | chr3:20842145-20844476
FORWARD LENGTH=1440
Length=1440
Score = 1901 bits (1029), Expect = 0.0
Identities = 1110/1149 (97%), Gaps = 5/1149 (0%)
Strand=Plus/Plus
Query 1 GAAAATCAAATCTAAGAAATGGGTAACGCGCTTAGGTTACTCCGGAAATGCTTGAATTCT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 294 GAAAATCAAATCTAAGAAATGGGTAACGCGATTAGGTTACTCCGGAAATGCTTGAATTCT 353
Query 61 CACGGCGTCTCTGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACTTC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CACGGCGTCTCCGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACTTC 413
Query 121 GAGACCACTTCTCAGGTTCCGGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCAAAAGGCT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 414 GAGACCACTTCTCAGGTTCCTGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCAAAAGGCT 473
Query 181 CAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCAGCCTAAA 240
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 474 CAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCGGCCTAAA 533
Query 241 ACTCCTGAGGAAGCCTCTAGGCTTGTTATCGCGACTCTAAAGAACCATCTAAAAGCAGAT 300
||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 534 ACTCCTGAGGAAGCCTCCAGGCTTGTTATCGCGGCTCTAAAGAACCATCAAAAAGCAGAT 593
Query 301 GTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTGAGGTCCCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTGAGGTCCCT 653
Query 361 ACGGAATCTCCTGTGTCTTTACCTAAAGGAGTTCGGTTTGAGCTTAAAACGCTTCCGGTG 420
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 654 ACGGAAGCTCCTGTGTCTTTACCTAAAGGAGTTCGGTTTGAGCTTAACACGCTTCCGGTG 713
Query 421 GATACAAAATCTGTGGCAGATGGAGATACCGTTACTGTGTATGTTAGTAGCAAAGACCCG 480
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 714 GATACAAAATCTGTGGCAGATGGTGATACTGTTACTGTGTATGTTAGTAGCAAAGACCCG 773
Query 481 CTTGTGTCATCTTCTCTTCCTAAGGAAGTCAGTCTTGCAGCAGTTAAAAGAGCCAAAGCG 540
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 774 CTTGTGTCATCTTCTCTTCCTAAGGACGTGAGTCTTGCAGCGGTTAAAAGAGCCAAAGCG 833
Query 541 CGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCACAAGACTATCATAGCTTCTGGT 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 834 CGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCACAAGACGATCATAGCTTCTGGT 893
Query 601 TACAGGATGATAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAAGTTCAGAATTAGACTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TACAGGATGATAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAAGTTCAGAATTAGACTA 953
Query 661 AGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTA 1013
Query 721 CTCAAGATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTCAAGATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGA 1073
Query 781 AGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAA 1133
Query 841 GGTCTTGCTTGGCATTATGTAGCTTACGACAAGCGTGCAGAGCTCGCAAAGTGGGAAAAT 900
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1134 GGTCTTGCTTGGCATTATGTAGCCTATGACAAGCGTGCAGAGCTCGCAAAGTGGGAAAAT 1193
Query 901 GAGGCTAGGCAAAAGCGTATTGGCTTGTGGGCATCTTCTAATCCAGAGAAGCCATGGGAG 960
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GAGGCTAGGCAAAAGCGCGTTGGCTTGTGGGCATCTTCTAATCCAGAGAAGCCATGGGAG 1253
Query 961 TGGAGAAAGAACAAACGTGAAGGCAAGTAATTATAACAAAACCaaaaaaaaaaaaaaaaT 1020
||||||||||||||||||| |||||| |||| ||||||||||||| ||||| || || |
Sbjct 1254 TGGAGAAAGAACAAACGTGGAGGCAATTAATGATAACAAAACCAATAAAAACAACAA--T 1311
Query 1021 ACAATACTATTCGATTAT--GATTATTGTGAATTGT-GAACCTGTGATCTGTTGTTGTTA 1077
|||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
Sbjct 1312 ACAATACTATTCGATTATATGATTATTGTGAATTAAAGAACTTGTGATCTGTTGTTGTAA 1371
Query 1078 TTGTAAGAGCACTATGTAAATGTTTTATGTATTGATAAGTAtttttttGGCAATAGAGAA 1137
||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1372 TTGTAAGAGAAGTATGTATATGTTTTATGTATTGACAAGTATTTTTTTGGCAATAGAGAA 1431
Query 1138 TTTCTCTTT 1146
|||||||||
Sbjct 1432 TTTCTCTTT 1440
> AT2G40410.2 | Symbols: | Staphylococcal nuclease homologue |
chr2:16873399-16875396 FORWARD LENGTH=1290
Length=1290
Score = 728 bits (394), Expect = 0.0
Identities = 757/930 (81%), Gaps = 34/930 (4%)
Strand=Plus/Plus
Query 59 CTCACGGCGTCTCTGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACT 118
||||||||||||| ||| | ||| ||| || |||||||| ||| |||||||| ||||
Sbjct 181 CTCACGGCGTCTCCGCCGCCACCGTCGGTGTTTCAGCTCTCGCTCACGATCTCTTCAACT 240
Query 119 TCGAGACCACTTCTCAGGTTCC-GGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCA-AAA 176
|||||| |||||| |||||||| | || ||||||||| || ||| ||| | | | |||
Sbjct 241 TCGAGATCACTTCCCAGGTTCCTGAAG-GGCTTGGGAGGTATGTTCAGTCAT-CTAGAAA 298
Query 177 GGCTCAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTC-AGC 235
|||||||||||||||||| |||||||||||||||||||||||||||| || |||| | |
Sbjct 299 AGCTCAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCAAAACCTCCA-C 357
Query 236 CTAAAACTCCTGAGGAAGCCTCTAGGCTTGTTA-TCGCGACTCT-AAAGAACCA-TCTA- 291
| | || |||||||||| ||||||||||| | | | | ||| ||| || | || |
Sbjct 358 CGCAGACAGCTGAGGAAGCTTCTAGGCTTGTCACT-GATA-TCTTAAA-AAGGAATC-AG 413
Query 292 AAAGCAGATGTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTT 351
||||| ||||||||||| |||||||||||||||||||| |||| |||| | ||| |||
Sbjct 414 AAAGCTGATGTTGAGGGGCTTTTGTCTTTCTATGGACTCCCTTTGTCTCATACTCTAGTT 473
Query 352 GAGGTCCCTACGGAATCTCCTGTGTCTTTACCTAAAGG-AGTTCGGTTT-GAGCTTAAAA 409
|| ||| || ||| ||||||||||||| ||| |||| | ||| ||| || || |||
Sbjct 474 GAAGTCACTGTTGAAGCTCCTGTGTCTTTGCCTGAAGGGA-TTCT-TTTCGAATTTCAAA 531
Query 410 CGCTTCCGGTGGATACAAAATCTGTGGCAGATGGAGATACCGTTACTGTGTATGTTAGTA 469
| |||||||||||| ||||| |||||||||||||||| ||| | || |||||||| ||||
Sbjct 532 CACTTCCGGTGGATCCAAAAGCTGTGGCAGATGGAGACACCATCACAGTGTATGTCAGTA 591
Query 470 GCAA-AGACCCGCTTGTGTCATCTTCTCTTCCTAAGG-AAGTCAGTCTTGCAGCAGTTAA 527
| ||| ||| |||||||||||||| |||| |||| |||||| ||||||||| ||| |
Sbjct 592 -CTTCAGAGCCGGTTGTGTCATCTTCTGTTCC-AAGGGAAGTCAATCTTGCAGCTGTTCA 649
Query 528 AAGAGCCAAAGCGCGTGAGAAGAAGAA-TTATACTGAAGCAGATGCACTTCAC-AAGACT 585
|||||| ||||| |||||||||| ||| |||| | |||| || | ||||||| || |
Sbjct 650 AAGAGCAAAAGCACGTGAGAAGA-GAAATTATCCAAAAGCTGACGAACTTCACCAAAAG- 707
Query 586 ATCATAGCTTCTGGTTACAGGATGA-TAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAA 644
||||| | ||||||||||||| | | ||| | || ||||||||||||| |||||| ||
Sbjct 708 ATCATTGATTCTGGTTACAGGGT-ACTAAATATTGAGAATGAGGAAGTTCTTGCTCGGAA 766
Query 645 GTTCAGAATTAGACTAAGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGA 704
|||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||| |||||
Sbjct 767 GTTCAGAATTAGACTAAGGGGAATAGATGCACCAGAGAGCCAAATGCCGTTTGGGAAAGA 826
Query 705 GGCGCATGATGAGCTACTCAA-GATGGTTGAAG-GGAAATGCTTGAAGGTGTTAGTATAT 762
||| || || | ||| || || ||| |||| | ||||| |||||||||||||||| |||
Sbjct 827 GGCACAAGAAGGGCT-CTTAAAGATTGTTGG-GCGGAAAAGCTTGAAGGTGTTAGTTTAT 884
Query 763 ACAGAGGATCGTTATGGAAGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAG 822
||| |||| ||||| |||| ||||| ||| ||||||||||||| | ||||| |||
Sbjct 885 GGAGAAGATCAATATGGGCGATGCGTAGGTGATTTATACTGCAATGGGATCTTTGTCCAG 944
Query 823 GAAGTAATGCTAAAGAAAGGTCTTGCTTGGCATTA-TGTAGCTTACGACAAGCGTGCAGA 881
|| | |||| |||||||||| |||||||||||||| | ||||||| |||||||| | |
Sbjct 945 GAGGCAATGTTAAAGAAAGGGCTTGCTTGGCATTACT-TAGCTTATGACAAGCGCCCGGT 1003
Query 882 GCTCGCAAAGTGGGAAAATGAGGCTAGGCAAAAGCGTATTGGCTTGTGGGCATCTTCTAA 941
||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 1004 TCTCGCAAAGTGGGAAAAGGAGGCAAGGCAGAAGCGTATTGGCTTGTGGGCTTCTTCAAA 1063
Query 942 TCCAGAGAAGCCATGGGAGTGGAGAAAGAA 971
|||||||||||||||||| |||||||||||
Sbjct 1064 TCCAGAGAAGCCATGGGACTGGAGAAAGAA 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5