BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486064

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56240.1 | Symbols: CCH | copper chaperone | chr3:20863257-2...   987    0.0  


> AT3G56240.1 | Symbols: CCH | copper chaperone | chr3:20863257-20864544 
REVERSE LENGTH=711
Length=711

 Score =  987 bits (534),  Expect = 0.0
 Identities = 651/703 (93%), Gaps = 25/703 (4%)
 Strand=Plus/Plus

Query  1    CGAATCTTTGCTTTTCCGTTACTATAAATACTTAAGAAGACACCATTTCTTCTCATTCAA  60
            ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct  1    CGAATCTTTGCTTTTGCGTTACTATAAATA-TTCAGAAGACACCATTTCTTCTCATTCAA  59

Query  61   CAAAC-AGACATCTCATTCCCTTATTCAG---ATC-A--TC---GGTCTCAAAGCTTAGT  110
            ||||| || |||||||||| || |||| |   ||| |  ||   || ||||||||||| |
Sbjct  60   CAAACAAG-CATCTCATTCTCTGATTCGGTCCATCGATCTCAAAGG-CTCAAAGCTTAAT  117

Query  111  CGTTTCCTTTCTTCTTATATATTATAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA  170
            ||||||||||||||   | |||| ||||||||||||||||||||||||||||||||||||
Sbjct  118  CGTTTCCTTTCTTC---T-TATTCTAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA  173

Query  171  TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTCCTAGGCAAAATGGAAGGGGTTG  230
            |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct  174  TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTTTTAGGCAAAATGGAAGGGGTTG  233

Query  231  AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  234  AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG  293

Query  291  AAGCAGTTTTCCAAACAGTTTCAAAGACTGGAAAGAAGACTTCTTACTGGCCAGTGGATG  350
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  294  AAGCAGTTTTCCAAACAGTTTCAAAGACCGGAAAGAAGACTTCTTACTGGCCAGTGGAGG  353

Query  351  CTGA-GACTGAGCCAAAAGCCGAGGCTGAGCCTAAGGCCGAGGCCGTGACTGAGACTAAA  409
            |||| | |||||||||||||||||||||| ||||||| |||  |||||||||||||||||
Sbjct  354  CTGAAG-CTGAGCCAAAAGCCGAGGCTGATCCTAAGGTCGAAACCGTGACTGAGACTAAA  412

Query  410  ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCGGATGTTGAACCAAAA  469
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  413  ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCTGATGTTGAACCAAAA  472

Query  470  GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAAAGATGAGAAGGAAGG  529
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  473  GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAACGATGAAAAGGAAGG  532

Query  530  CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTGTGTGTGTTGTTGTAAGCAATGC  589
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  533  CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTTTGTGTGTTGTTGTAAGAAATGC  592

Query  590  TTTCTCTAAACATCTAATAT-TTTC---ATGTATACCTTTTTCAACCT-TTGATAAGAAG  644
            || ||||||| | ||||||| |||    |||||||||||||||||| | ||||||| |||
Sbjct  593  TTCCTCTAAATACCTAATATCTTTATGTATGTATACCTTTTTCAAC-TATTGATAACAAG  651

Query  645  ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAATAAATTT  687
            |||||||||||||||||||||||||||||||||||| || |||
Sbjct  652  ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAAGAAGTTT  694



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33255005314


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5