BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486064 Length=687 Score E Sequences producing significant alignments: (Bits) Value AT3G56240.1 | Symbols: CCH | copper chaperone | chr3:20863257-2... 987 0.0 > AT3G56240.1 | Symbols: CCH | copper chaperone | chr3:20863257-20864544 REVERSE LENGTH=711 Length=711 Score = 987 bits (534), Expect = 0.0 Identities = 651/703 (93%), Gaps = 25/703 (4%) Strand=Plus/Plus Query 1 CGAATCTTTGCTTTTCCGTTACTATAAATACTTAAGAAGACACCATTTCTTCTCATTCAA 60 ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| Sbjct 1 CGAATCTTTGCTTTTGCGTTACTATAAATA-TTCAGAAGACACCATTTCTTCTCATTCAA 59 Query 61 CAAAC-AGACATCTCATTCCCTTATTCAG---ATC-A--TC---GGTCTCAAAGCTTAGT 110 ||||| || |||||||||| || |||| | ||| | || || ||||||||||| | Sbjct 60 CAAACAAG-CATCTCATTCTCTGATTCGGTCCATCGATCTCAAAGG-CTCAAAGCTTAAT 117 Query 111 CGTTTCCTTTCTTCTTATATATTATAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA 170 |||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| Sbjct 118 CGTTTCCTTTCTTC---T-TATTCTAGCCATGGCTCAGACCGTTGTCCTCAAAGTTGGTA 173 Query 171 TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTCCTAGGCAAAATGGAAGGGGTTG 230 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 174 TGTCATGCCAAGGCTGCGTTGGTGCCGTCAATAGAGTTTTAGGCAAAATGGAAGGGGTTG 233 Query 231 AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 AGTCATTTGACATTGATATCAAGGAGCAAAAGGTGACAGTGAAAGGTAATGTTGAGCCTG 293 Query 291 AAGCAGTTTTCCAAACAGTTTCAAAGACTGGAAAGAAGACTTCTTACTGGCCAGTGGATG 350 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 294 AAGCAGTTTTCCAAACAGTTTCAAAGACCGGAAAGAAGACTTCTTACTGGCCAGTGGAGG 353 Query 351 CTGA-GACTGAGCCAAAAGCCGAGGCTGAGCCTAAGGCCGAGGCCGTGACTGAGACTAAA 409 |||| | |||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct 354 CTGAAG-CTGAGCCAAAAGCCGAGGCTGATCCTAAGGTCGAAACCGTGACTGAGACTAAA 412 Query 410 ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCGGATGTTGAACCAAAA 469 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 413 ACCGAGGCTGAGACTAAGACTGAGGCTAAGGTTGATGCAAAAGCTGATGTTGAACCAAAA 472 Query 470 GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAAAGATGAGAAGGAAGG 529 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 473 GCCGCAGAAGCCGAGACTAAGCCATCACAAGTTTAAGTATACTAACGATGAAAAGGAAGG 532 Query 530 CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTGTGTGTGTTGTTGTAAGCAATGC 589 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 533 CTAATCTACCTTTACAATGCTTCTTTATCTTTTGCTTTTGTGTGTTGTTGTAAGAAATGC 592 Query 590 TTTCTCTAAACATCTAATAT-TTTC---ATGTATACCTTTTTCAACCT-TTGATAAGAAG 644 || ||||||| | ||||||| ||| |||||||||||||||||| | ||||||| ||| Sbjct 593 TTCCTCTAAATACCTAATATCTTTATGTATGTATACCTTTTTCAAC-TATTGATAACAAG 651 Query 645 ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAATAAATTT 687 |||||||||||||||||||||||||||||||||||| || ||| Sbjct 652 ATGTTGGACCCATGTTGGTCCGACTTTCTTTTATAAGAAGTTT 694 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33255005314 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5