BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486120 Length=915 Score E Sequences producing significant alignments: (Bits) Value AT3G56820.1 | Symbols: | unknown protein; Has 34 Blast hits to... 1354 0.0 > AT3G56820.1 | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:21039803-21041760 REVERSE LENGTH=970 Length=970 Score = 1354 bits (733), Expect = 0.0 Identities = 862/923 (93%), Gaps = 13/923 (1%) Strand=Plus/Plus Query 1 GAAAATGGCAAACCCTAGAAGAGTAGTGATCGATAACCAGAGATTGTCACCTATAATCAA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 46 GAAAATGGCAAACCCTAGAAGAGTAGTGATCGAGAACCAGAGATTGTCACCTTTAATCAA 105 Query 61 CCTACTGAAGAAGCCTCAAGCGTTTCCTATTCTCCTCTCGTTCTTCCTCTTCCTCACATG 120 |||||||||||||||||||||| ||||| | || |||||||| |||||||| |||||||| Sbjct 106 CCTACTGAAGAAGCCTCAAGCGATTCCTCTGCTTCTCTCGTTGTTCCTCTTGCTCACATG 165 Query 121 GATCTCCCTCAGGTTACAGCACTCTT--C--T--CACGTCTCTTCGTCCTCTTCACATCC 174 |||||||||||||||||| ||||||| | | |||||||||||||||||||||||||| Sbjct 166 GATCTCCCTCAGGTTACAACACTCTTCACAATCACACGTCTCTTCGTCCTCTTCACATCC 225 Query 175 AAAATCGACGCTAAATAGTCATCCCGATTTGAAAGTCTT-CGACGACGACGATAAGGTTA 233 ||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 226 GAAATCGACGGTAAATAGTCATCCCGATTTGAAAGT-TTACGACGACGACGATAAGGCTA 284 Query 234 ATCTAGTCCGGTTCGGTTTGGCGTCGCTTTCTCCTGTTCGGAAAGACGATCGTGGATGGT 293 || | ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| Sbjct 285 ATTTGGTCCGGTTCGGTTTGGCGTCGCTTTCTCCTGCTCGGAAAGACGACCGTGGTTGGT 344 Query 294 TGCTTGATCCCGTTATACTTGCTCGTGATTCTCAGCTCAAAGGTGGAGCCGCCTCGTGTG 353 |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 345 TGCTTGATCCCGTTATCCTTGCTCGTGATTCTGAGCTCAAAGGTGGAGCCGCATCGTGTG 404 Query 354 TTTCCATTCATGTTGGTGAAATACGGCCTGGTGGATTGAGGGGAAATCATAGACACCATA 413 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 405 TTTCCATTCATGTTGGTGAAATACGGCCTGGTGGATTGAGGGGAAACCATAGACACCATA 464 Query 414 CCTGTAATGAGACGTTTGTCATATGGGGAGCTAAGACAAGATTCAGGCTGGAAAACCACG 473 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 465 CCTGTAATGAGACGTTTGTCATATGGGGAGCCAAGACAAAATTCAGGCTGGAAAACCACG 524 Query 474 AAGTCGATAAAGGTTACGCCGAAGTGTTAATTGGAGAGGATGAAGTAGCTGTAGCAGTTA 533 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 525 AAGTCGATAAAGGTTACGCCGAAGTGTTAATTGGAGAGGATGAGGTAGCTGTAGCTGTTA 584 Query 534 GTCCGAGTGGCACGGCTCATGCTCTAGTAAATGTTGATCCTGTGCGTTCTACTTTCTTCA 593 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 585 GTCAGAGTGGCACGGCTCATGCTCTAGTAAATGTAGATCCTGTGCGTTCTACTTTCTTCA 644 Query 594 TAGGATGCCAAGACTATATACAGAACAACAGCTCAAATAGCGACTACAAAGTATGGAACG 653 |||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||| | Sbjct 645 TAGGCTGCCAAGACCATATGCAGAACAACAGCTCAACTAGCGACTACAAAGTATGGAATG 704 Query 654 ATCTATAAACCAAAGTGGGTTAGTTTAGTTTCTCTCAATCGTTCAGATTTTCATTGGCTT 713 ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct 705 ATCTATAAACCAAAGTGGGTTAGTTTAGTTTCTCTTGTTCATTCAAATTTTCATTGGCTT 764 Query 714 TTCTTTCTTTTCGAGCTCTTATTTGTATAGAATAGGCTTTGTTATT-ACTTGTCAGTTAT 772 |||||||||| ||||| |||||||||||||| ||||||||||| || ||| |||||| || Sbjct 765 TTCTTTCTTT-CGAGCCCTTATTTGTATAGAGTAGGCTTTGTT-TTGACTGGTCAGTCAT 822 Query 773 ATTGTTACTGAGATTATAAAACTGAAACTTCCAATGTTTAGTGTTCATTGATATGATGAT 832 |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | Sbjct 823 ATTGTTACTGAGATTATAAACCTGAAACTTCCAATGTT--GTGTTCATTGATATGATGGT 880 Query 833 AAGATTAGTCTGATCAGTGAGAATCAATTCGTATGTATAGTTTGTTGTTTCTTCACAGTT 892 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 881 AAGATTAGTCTGATCAGTGAGAATCAATTCGTATGTAGAGTTTGTTGTTTCTTCACAGCT 940 Query 893 GAATTTGCAATGCAAGTATTTCT 915 |||| ||||||||| || ||||| Sbjct 941 GAATGTGCAATGCATGTCTTTCT 963 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44708390830 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5