BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486132 Length=657 Score E Sequences producing significant alignments: (Bits) Value AT3G56910.1 | Symbols: PSRP5 | plastid-specific 50S ribosomal p... 959 0.0 AT3G56900.1 | Symbols: | Transducin/WD40 repeat-like superfami... 71.3 1e-11 > AT3G56910.1 | Symbols: PSRP5 | plastid-specific 50S ribosomal protein 5 | chr3:21069411-21070356 REVERSE LENGTH=693 Length=693 Score = 959 bits (519), Expect = 0.0 Identities = 621/667 (93%), Gaps = 19/667 (3%) Strand=Plus/Plus Query 1 AATCCGTTCGTTAAGAAGACACAGACA-AG-G-A-GA-AAAAAGCTTATCCACTA-GAGA 54 ||||||||||||||||||||||||||| || | | || ||||||||||||||||| | | Sbjct 1 AATCCGTTCGTTAAGAAGACACAGACAGAGAGAAGGAGAAAAAGCTTATCCACTATCAAA 60 Query 55 -CACAG--AGAAGACGAATTCTTCCATTAGAAGAAGAAGATGGctcttctctgcttcaat 111 | || |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGAAAGTCTGAAGACAAATTCTTCCATTAGAAGAAGAAGATGGCTCTTCTCTGCTTCAAT 120 Query 112 tctctcccttctctttcttctctctcttcttcatcttcgtcgcgccttcttcaaccttcg 171 |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||| || || Sbjct 121 TCTCTCCCTTCTCTCTCTTCTCTTTCTTCTTCTTCTTCCTCGCGCCTTCTTCAATCTCCG 180 Query 172 tctttcgcttctcCAGTTTGGAGCCTTAAACCCAACGCTGTTGAGTCAAAGAACAGAGTC 231 ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 181 TCTTTCGCTTCTCCAGTTTTGAGCCTTAAACCCAACGCTGTCGAGTCCAAGAACAGAGTC 240 Query 232 TCTCTCAGTGCTTACAGCTTGAACTCTAGCCATGGAAGGGCGGTAGCAATTGTGGTGAAG 291 ||||||||||||||||||||||||||||||||||| | || ||||||||||||| Sbjct 241 TCTCTCAGTGCTTACAGCTTGAACTCTAGCCATGG-A-------AG-AATTGTGGTGAAG 291 Query 292 GCGGCTGCTTCTGGCGTGGACGGGGCTGAGCCCGAGAGCAATGAGGAACCAAATACTGTT 351 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 292 GCGGCTGCTTCTGGCGTGGACGGGGCTGAGCCTGAGAGCAAGGAGGAACCAAAGACTGTT 351 Query 352 GTTGCTGCTGTTCCAGTGGATAAACTACCATTGGAATCAAAAGAAGCTAAAGAGAAACTG 411 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 352 GTTGCTGCTGTTCCAGTGGATAAACTACCGTTGGAATCGAAAGAAGCTAAAGAGAAACTG 411 Query 412 CTCTTGGAACTGAGGCTGAAGATGAAGCTGGCCAAGAAGATTAGGCTACGCAGGAAACGT 471 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 412 CTCTTGGAATTGAGGCTGAAGATGAAGCTGGCCAAAAAGATTAGGCTACGCAGGAAACGT 471 Query 472 CTGGTTCGTAAGCGTAGGATGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAA 531 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 CTGGTTCGTAAGCGTAAGATGAGGAAGAAGGGTCGATGGCCACCTTCCAAGATGAAGAAA 531 Query 532 AACAAGAATGTCTAAGTGACTGAACTGTTTGCTGCTTTTCATATTCGTTTTT-GTAATGT 590 ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| Sbjct 532 AACAAGAATGTCTAAGTGACTCAACTGTTTGCTGCTTTTCGTATTCGTTTTTTGTAATGT 591 Query 591 TCTTTTTGGTGTTCAAGGACCCTTAATGTACTTCAAATGCAACCATTGTTTTTGGATTTA 650 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 592 TCTTTTTGGTGTTCAAAGACCATTAATGTACTTCAAATGCAACCATTGTTTTTGGATTTA 651 Query 651 ACTTCAA 657 ||||||| Sbjct 652 ACTTCAA 658 > AT3G56900.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:21066124-21069483 FORWARD LENGTH=1690 Length=1690 Score = 71.3 bits (38), Expect = 1e-11 Identities = 38/38 (100%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 620 ACTTCAAATGCAACCATTGTTTTTGGATTTAACTTCAA 657 |||||||||||||||||||||||||||||||||||||| Sbjct 1690 ACTTCAAATGCAACCATTGTTTTTGGATTTAACTTCAA 1653 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31747980904 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5