BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486137
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56940.1 | Symbols: CRD1, CHL27, ACSF | dicarboxylate diiron... 2279 0.0
AT3G56950.2 | Symbols: SIP2;1 | small and basic intrinsic prote... 187 2e-46
> AT3G56940.1 | Symbols: CRD1, CHL27, ACSF | dicarboxylate diiron
protein, putative (Crd1) | chr3:21076505-21078443 FORWARD
LENGTH=1493
Length=1493
Score = 2279 bits (1234), Expect = 0.0
Identities = 1372/1438 (95%), Gaps = 11/1438 (1%)
Strand=Plus/Plus
Query 1 CTCTTTGCTTCTGCAACTCACAATCAATGGCGGCTGAAATGGCGTTAGTGAAACCCATCT 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 64 CTCTTTGCTTCTGCAACTCACAGTCAATGGCGGCTGAAATGGCGTTAGTGAAACCCATCT 123
Query 61 CCAAATTCACTTCCCCAAAGCTCTCAAACCCGAGCAAATACCTCTCCGGCCGACGTTTCT 120
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 124 CCAAGTTCTCTTCCCCAAAGCTCTCAAACCCGAGCAAATTCCTCTCCGGCCGACGTTTCT 183
Query 121 CCACCGTGATCAGAATGTCAGCCACTTCCTCGCCGCCTCCTCCGGCCTCCGCCACCTCGA 180
||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||
Sbjct 184 CCACCGTGATCAGAATGTCAGCCTCTTCCTCACCGCCTCCTCCAACCACCGCCACCTCGA 243
Query 181 AATCCAAGAAGGGGACGAAGAAAGAGATTCAGGAGTCGCTTCTTACTCCGAGGTTCTACA 240
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 244 AGTCCAAGAAGGGAACGAAGAAAGAGATTCAAGAGTCGCTTCTTACTCCGAGGTTCTACA 303
Query 241 CGACGGATTTCGAGGAAATGGAACAGCTTTTCAACACTGAGATCAACAAGAACCTTAACG 300
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 304 CGACGGACTTCGAGGAAATGGAACAGCTTTTCAACACGGAGATCAACAAGAACCTTAACG 363
Query 301 AGGAAGAGTTCGTGGCTCTGCTTCAAGAGTTCAAGACCGATTACAATCAGACACATTTCG 360
| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 364 AAGCAGAGTTCGAGGCTCTGCTTCAAGAGTTCAAGACCGATTACAACCAGACACATTTCG 423
Query 361 TGAGGAACAAAGAGTTTAAAGAAGCTGCAGACAAATTGCAGGGACCTCTCCGACAGATCT 420
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 424 TGAGGAACAAGGAGTTTAAAGAAGCTGCAGACAAATTGCAAGGACCTCTCCGACAGATCT 483
Query 421 TTGTTGAGTTCCTTGAGCGGTCTTGTACTGCTGAGTTCTCTGGTTTCCTTCTCTACAAGG 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TCGTTGAGTTCCTTGAGCGGTCTTGTACTGCTGAGTTCTCTGGTTTCCTTCTCTACAAGG 543
Query 481 AGCTTGGAAGAAGACTCAAGAAAACAAACCCTGTTGTGGCCGAGATCTTCTCTCTTATGT 540
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 544 AGCTTGGTCGAAGACTCAAGAAAACAAACCCTGTTGTGGCTGAGATCTTCTCTCTTATGT 603
Query 541 CCAGAGATGAAGCAAGGCATGCCGGGTTCTTGAACAAGGGTTTGTCTGATTTTAACTTGG 600
| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 604 CTAGAGATGAAGCAAGACATGCCGGGTTCTTGAACAAGGGATTGTCTGATTTCAACTTGG 663
Query 601 CTCTTGATTTGGGTTTCCTAACAAAGGCAAGGAAATACACTTTCTTCAAGCCGAAATTCA 660
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 664 CTCTTGATTTGGGTTTCCTGACAAAGGCAAGGAAATACACTTTCTTCAAGCCAAAATTCA 723
Query 661 TCTTCTACGCGACTTACTTATCCGAGAAAATCGGGTACTGGAGATACATCACAATCTACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TCTTCTACGCGACTTACTTATCCGAGAAAATCGGGTACTGGAGATACATCACAATCTACA 783
Query 721 GACACCTCAAGGCAAACCCTGAGTTCCAATGTTACCCAATCTTCAAGTACTTTGAGAACT 780
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GACACCTCAAGGAAAACCCTGAGTTCCAATGTTACCCAATCTTCAAGTACTTTGAGAACT 843
Query 781 GGTGTCAAGACGAGAACCGTCATGGAGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTC 840
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 844 GGTGTCAAGACGAGAACCGTCATGGTGATTTCTTCTCTGCTTTGATGAAAGCTCAGCCTC 903
Query 841 AGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGGTTTATG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AGTTCCTCAATGACTGGCAAGCCAAGCTCTGGTCTCGCTTCTTCTGCCTCTCGGTTTATG 963
Query 901 TGACAATGTACCTCAATGATTGTCAAAGAACTGATTTCTATGAAGGTATTGGGTTAAACA 960
||||||||||||||||||| || ||||||||| ||||||| || ||||| ||||||||||
Sbjct 964 TGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAGGGTATCGGGTTAAACA 1023
Query 961 CAAAGGAGTTCGATATGCATGTCATCATCGAGACAAACCGAACCACGGCAAGAATATTCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CAAAGGAGTTCGATATGCATGTCATCATCGAGACAAACCGAACCACGGCAAGAATATTCC 1083
Query 1021 CGGCAGTGCTGGATGTTGAGAACCCTGAGTTCAAGAGGAAACTCGACAGAATGGTTGTGA 1080
| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1084 CTGCGGTGCTGGATGTTGAGAACCCTGAGTTCAAGAGGAAACTGGATAGAATGGTTGTGA 1143
Query 1081 GCTATGAGAAGCTGCTGGCTATAGGACAAACCGATGATCCTTCCTTCATCAAGACCCTCA 1140
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 1144 GCTATGAGAAGCTGCTGGCTATAGGAGAAACAGATGATGCTTCCTTCATCAAGACCCTCA 1203
Query 1141 AGCGTATTCCTTTAGTTACTTCTTTAGCCTCTGAGATCTTGGCTGCTTATCTCATGCCTC 1200
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 AGAGGATTCCTTTGGTTACTTCTTTAGCCTCTGAGATCTTGGCTGCTTATCTCATGCCTC 1263
Query 1201 CTGTTGAGTCTGGCTCTGTCGATTTCGCCGAGTTTGAGCCTAATCTTGTCTATTAGTAGC 1260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CTGTTGAGTCTGGCTCTGTTGATTTCGCCGAGTTTGAGCCTAATCTTGTCTATTAGTAGC 1323
Query 1261 TGCTATGTCAAGTCTTGAGTTTACGGCTGGTTCTTGATTTCTTGTAATTGAATGATCGAA 1320
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 TGCAATGTCAAGTCTTGAGTTTACGGCTGGTTCTTGATTTCTTGTAATTGAATGATCGAA 1383
Query 1321 ACTGAGAAACATCGTCtttttttttt-GCAATAAACCAAATACTTTTACTGCATATAATT 1379
|||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||
Sbjct 1384 ACTGAGAAACATCGTCTTTTTTTTTTTGCAATAAAC----T--TTT-ACTGCATATATTT 1436
Query 1380 GATCAAATTACACATTGGA-TTCACT-AAATTTCAGCTTTTATTGAACTGGTTGATAC 1435
||||| ||| | ||||||| || ||| ||||||||| |||||||||||||||||||||
Sbjct 1437 GATCATATTGCGCATTGGACTT-ACTTAAATTTCAGATTTTATTGAACTGGTTGATAC 1493
> AT3G56950.2 | Symbols: SIP2;1 | small and basic intrinsic protein
2;1 | chr3:21078297-21079856 REVERSE LENGTH=1109
Length=1109
Score = 187 bits (101), Expect = 2e-46
Identities = 139/155 (90%), Gaps = 11/155 (7%)
Strand=Plus/Minus
Query 1284 CGGCTGGTTCTTGATTTCTTGTAATTGAATGATCGAAACTGAGAAACATCGTCttttttt 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CGGCTGGTTCTTGATTTCTTGTAATTGAATGATCGAAACTGAGAAACATCGTCTTTTTTT 1050
Query 1344 ttt-GCAATAAACCAAATACTTTTACTGCATATAATTGATCAAATTACACATTGGA-TTC 1401
||| ||||||||| | ||| |||||||||| ||||||| ||| | ||||||| ||
Sbjct 1049 TTTTGCAATAAAC----T--TTT-ACTGCATATATTTGATCATATTGCGCATTGGACTT- 998
Query 1402 ACT-AAATTTCAGCTTTTATTGAACTGGTTGATAC 1435
||| ||||||||| |||||||||||||||||||||
Sbjct 997 ACTTAAATTTCAGATTTTATTGAACTGGTTGATAC 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5