BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486184
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2194 0.0
AT3G29788.1 | Symbols: | unknown pseudogene | chr3:11602028-11... 704 0.0
AT5G52500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 473 2e-132
> AT3G57400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G52500.1);
Has 38 Blast hits to 38 proteins in 7 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:21238433-21240228 FORWARD LENGTH=1796
Length=1796
Score = 2194 bits (1188), Expect = 0.0
Identities = 1584/1756 (90%), Gaps = 103/1756 (6%)
Strand=Plus/Plus
Query 1 AGAGAATGCTCTCAGTCTCAGCCTCTCTTCA-CA--ACTAA-CCCAGAAGAAT--TCTga 54
||||||||||||||||||||||||||| ||| || ||||| ||||||||||| || |
Sbjct 29 AGAGAATGCTCTCAGTCTCAGCCTCTCCTCACCACCACTAACCCCAGAAGAATCCTCACA 88
Query 55 gagagagagagagagagagaATC--AATGGGTTTGATATCAGCGAAAGAGACGAAGAACA 112
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 89 GACAGAGAGAGAGAGAGAGAATCAGAATGGGTTTGATATCAGCGAAAGAGACGAAG---A 145
Query 113 ACAACACTAGAGGAATGGGTTTGctcttagtcttcttccccgaccaccacaacgacgac- 171
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 146 ACAACACTAGAGGAATGGGTTTGCTCTTAGTCTTCTTCCCCGACCACCACAACAACAACG 205
Query 172 tctccttcttcc-tcttcctcttcttcttctccgg---caacaactctcttccgctccag 227
| | || ||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 206 ACGAC-TC-TCCTTCTTCTTCTTCTTCTTCTCCGGCAACAACAACTCTCTTCCGCTCCAG 263
Query 228 atcttctcgtcttctcctctccaaagctcaatccacaatctcaatctgcatcctcctcct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 ATCTTCTCGTCTTCTCCTCTCCAAAGCTCAATCCACAATCTCAATCTGCATCCTCCTCCT 323
Query 288 cttcctcactctcttcctcttcactctctccaccttcgaaccttcctctGGCTTTCCCGC 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CTTCCTCACTCTCTTCCTCTTCACTCTCTCCACCTTCGAACCTTCCTCTGGCTTTCCCGC 383
Query 348 CG--T-TTCTTCTCGTCCTCACCGCCGATTTCTCCTCAATCGCGACATCTCCG--GC-TC 401
|| | |||||||||||||||||| |||||||||||||| ||||||||||||| | ||
Sbjct 384 CGTTTCTTCTTCTCGTCCTCACCGTCGATTTCTCCTCAACCGCGACATCTCCGCCTCTTC 443
Query 402 TGAATCTCGTCGTCGTTATAACCGATTCGCTCTGCAGGGAATGGGTACTCTGTTTCTCAG 461
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 444 TGAATCTCGTCGTCGTTATAACCGATTCGCTCTCCAAGGTATGGGTACTCTGTTTCTCAG 503
Query 462 AGGAACCAAGAGCATGCACGATTTGATTGTTGCTCATGTAGCTTCCGATACGACGGAAGA 521
|||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||
Sbjct 504 AGGAACCAAGAGCATGCACGATTTGATTGTTGTTCATATCTCTTCCGATACTACGGAAGA 563
Query 522 CGATCTCCGTCTCTTCATGCGGTTGCTTCACCGCTCCGGAGTCACTTCCAAATCCGACGT 581
||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||
Sbjct 564 CGATCTCCGTCTCTTCATGCGCTTGATCCACCGCTCCGGTGTCACTTCCAAATCCGACGT 623
Query 582 CGTTCTACTCTTCAATTCGGGTTCGAGATTCGTC-GAATTGATCGAAGAAGAGAACGACT 640
|||| ||||||||||||||||| |||||||| | ||| |||||||||||||||||||||
Sbjct 624 CGTTTTACTCTTCAATTCGGGTACGAGATTC-ACTGAAATGATCGAAGAAGAGAACGACT 682
Query 641 CCTTCTTAAAACTCGTTGATGTTCATCGGAATTCGAATTCGTCGAATCAAATCGACTCCG 700
| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 683 CGTTCTTAAAACTCGTTGATGTTCATC-G-----GAATTCGTCGAATCAAATCGACTCCG 736
Query 701 TTTGGGGATTTAATCTGGCGAAATTCATGAAGAAGCAATGGAGCAAGAAGGAGACATCAT 760
|||||||||||||||| ||||||||||||||||||||| | || | |||||
Sbjct 737 TTTGGGGATTTAATCTCACGAAATTCATGAAGAAGCAAT----C------GA-A-ATCAT 784
Query 761 CATCGTCATCAGAGCCAATTTGGGGGAAGAAGACTCATCGAGCGAATAATTTCAACGATT 820
||||||| | ||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 785 CATCGTC-T--GAGCCAATTTGGGGGAAGAAGACGCATCGAGC---TAATTACAACGATA 838
Query 821 CGTCGTCATTGAACAACTCGACCGAGTCAACCGAGTTGTTGACTCATGGCTCAGTAGTGG 880
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 CGTCGTCGTTGAATAACTCGACCGAGTCAACCGAGTTGTTGACACATGGCTCAGTAGTGG 898
Query 881 GTTTCGACGTGACTGAGCTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCACGTTC 940
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCACGTTC 958
Query 941 CGATAAGCTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGGCGCAATT 1000
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 CGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGACGCAATT 1018
Query 1001 TCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGTTAGCCC 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1019 TCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGCTAACCC 1078
Query 1061 GGATTCGTAACCGGAGCCCCGAGTCAGTCCTCTTCTTCTCTAAACAC---ACTAGTAGCA 1117
|||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1079 GGATTCGTAACCGGAGCCTTGAGTCAGTCCTCTTCTTCTCTAAACACAGTAGTAGTAGCA 1138
Query 1118 AGAAAAGCTCCGACGTTAATCCGGCGATTTTGATCGGTGGAGCTAAAGGAATCAGGAGAT 1177
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1139 AGAAAAGCTCCGAGGTTAATCCGGCGATTCTGATCGGTGGAGCTAAAGGAATCAGGAGGT 1198
Query 1178 TATCGAGCTCGATGCACACTGAGATTGTGAGAGCGACGATTCAGCAGCAGCATAAGAAGA 1237
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1199 TATCGAGCTCGATGCACACTGAGATCGTGAGAGCGACGATTCAGCAGCAGCATAAGAAGA 1258
Query 1238 AGAACTCGGTTACGGAATCGGTGGT-TCTGAGTCAACTCGTTGGGAATGTTCACATGACG 1296
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct 1259 AGAACTCGGTTACGGAATCGGTGGTGT-TGAGCCAACTCGTTGGGAATGTTCACATGACG 1317
Query 1297 AAGAATTTTGAGGTGGTTACGAGTGAGTCGGTGGTACCGGAAGCGAGTTCACTGGCTGAG 1356
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAGAATTTTGAAGTGGTTACGAGTGAGTCGGTGGTACCGGAAGCGAGTTCACTGGCTGAG 1377
Query 1357 TTAAGGACGAGAAACTCGGCGGCTTCGTCGATGAAGAATCATGATATAATACAACGAGGT 1416
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1378 TTAAGGACGAGAAACTCGGCGGCTTCGTCGATAAAGAATCATGATATAATACAAAGAGGT 1437
Query 1417 GGT-G-----GTAATAGTAATC---------ATATTATGGCTATTATTATGAAACGTATT 1461
||| | |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1438 GGTGGTAATAGTAATAGTAATCATATTATTGATATTATGGCGATTATTATGAAACGTATT 1497
Query 1462 TGTTCTTGTGAATTAGATTCTTCTG----T--TTA----TA--ATTA--CT------G-T 1500
||||||||||||||||||||||||| | ||| || |||| | | |
Sbjct 1498 TGTTCTTGTGAATTAGATTCTTCTGTTTATAATTACTGTTAGCATTATTTTAAAAGAGTT 1557
Query 1501 TA-G-----aaaaaaaTAGGG-AAatttttattt-tgtgttcgagatttttgtacacatt 1552
|| | |||||||||||| ||||||| |||| | |||| || | |||||||||||||
Sbjct 1558 TACGAAACAAAAAAAATAGGGAAAATTTTAATTTATTTGTTTGAAAGTTTTGTACACATT 1617
Query 1553 tgacatttgttatgtt-gttagatttttgatttttCACGGATG-TTCTATTAGTGTGTCC 1610
|||||||||||||||| |||||||||||||||||||| |||| || |||||||||||||
Sbjct 1618 TGACATTTGTTATGTTCTTTAGATTTTTGATTTTTCACAGATGTTTTTATTAGTGTGTCC 1677
Query 1611 ACG--ATGTATTCATTATTGATTTGGTCTCCTTCGATATAATCATTTGATAAAATCAGGA 1668
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1678 ACGTTCTGTATTCATTATTGATTTGGTCTCCTTCGAAATAATCATTTGATAAAATCAGCA 1737
Query 1669 AAATACGATTGTTTTT 1684
|||||| ||| |||||
Sbjct 1738 AAATACCATTATTTTT 1753
> AT3G29788.1 | Symbols: | unknown pseudogene | chr3:11602028-11603824
REVERSE LENGTH=758
Length=758
Score = 704 bits (381), Expect = 0.0
Identities = 516/576 (90%), Gaps = 30/576 (5%)
Strand=Plus/Plus
Query 756 ATCATCATCGTCATCAGAGCCAATTTGGGGGAAGAAGACTCATCGAGCGAATAATTTCAA 815
||| |||||||| | ||| |||||||| ||||||||||||||||||| || |||
Sbjct 93 ATCGTCATCGTC-T--GAGGCAATTTGGTGGAAGAAGACTCATCGAGC------TTACAA 143
Query 816 CGATTCGTCGTCATTGAACAACTCGACCGAGTCAACCGAGTTGTTGACTCATGGCTCAGT 875
|||||||||||| ||||| ||||||||| | || | | |||||||||||
Sbjct 144 CGATTCGTCGTCGTTGAATAACTCGACC--G--AA-C---------A--CATGGCTCAGT 187
Query 876 AGTGGGTTTCGACGTGACTGAGCTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCA 935
|||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 188 AGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGCTACCCGGGTTTGTGGATGA 247
Query 936 CGTTCCGATAAGCTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGGCG 995
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 248 CGTTCCGATAAGCTTGAGAAGATGGGTGTGTTACCCAATGCTGCTAGGTCGAGTAAGACG 307
Query 996 CAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGTT 1055
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 308 CAATTTCAAACACATTATGCTCGTGGACCCTAAAACCTCCTTGTTCCTCAGTGACCCGTT 367
Query 1056 AGCCCGGATTCGTAACCGGAGCCCCGAGTCAGTCCTCTTCTTCTCTAAACACACTAGTAG 1115
| ||||||||||||| |||| |||||| |||||||||||||||||| || |||| ||| |
Sbjct 368 AACCCGGATTCGTAATCGGATCCCCGAATCAGTCCTCTTCTTCTCT-AA-ACAC-AGTGG 424
Query 1116 CAAGAAAAGCTCCGACGTTAATCCGGCGATTTTGATCGGTGGAGCTAAAGGAATCAGGAG 1175
|||||||||||| || |||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 425 CAAGAAAAGCTCTGATGTTATTCCGGTGATTTTGATCGATGGAGCTAAAGGAATCAGGAG 484
Query 1176 ATTATCGAGCTCGATGCACACTGAGATTGTGAGAGCGACGATTCAGCAGCAGCATAAGAA 1235
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 485 ATTATCGAGCTCGATGCACACTGAGATTGTGAGAGCGACGATTTAGCTGCAGCATAAGAA 544
Query 1236 GAAGAACTCGGTTACGGAATCGGTGGT-TCTGAGTCAACTCGTTGGGAATGTTCACATGA 1294
||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 545 GAAAAACTCGGTTACGGAATCGGTTGTGT-TGAGTCAACTCGTTGGGAATGTTCACATGA 603
Query 1295 CGAAGAATTTTGAGGTGGTTACGAGTGAGTCGGTGG 1330
||||||||||||| ||||||||||||||||||||||
Sbjct 604 CGAAGAATTTTGAAGTGGTTACGAGTGAGTCGGTGG 639
> AT5G52500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G57400.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:21301525-21302829 FORWARD LENGTH=1305
Length=1305
Score = 473 bits (256), Expect = 2e-132
Identities = 422/496 (85%), Gaps = 35/496 (7%)
Strand=Plus/Plus
Query 860 TGACTCATGGCTCAG-TAGTGGGTTTCGACGTGACTGAGCTGGATCCTGAAAACTCGCTA 918
||||||||||||| | |||| ||||||||||| |||||| |||||||||||||||| ||
Sbjct 664 TGACTCATGGCTC-GATAGTTGGTTTCGACGTAACTGAGTTGGATCCTGAAAACTCTTTA 722
Query 919 TCCGGGTTTATGGATCACGTTCCGATAAGCTTGAGAAGATGGGCGTGTTACCCAATGCTG 978
||||||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||
Sbjct 723 TCCGGGTTTATGGATCAAGTTCCGTTAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTT 782
Query 979 CTAGGTCGAGTAAGGCGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTG 1038
|| ||||||||| | |||| |||||||||||||||||| || ||||||||||| || ||
Sbjct 783 CTTGGTCGAGTACGACGCAGTTTCAAACACGTTATGCTTGTTGACGCTAAAACTTCATTT 842
Query 1039 TTCCTCGGTGACCCG-TTAGCCCGGATTCGTAACCGGAGCCCCGAGTCAGTCCTCTTCTT 1097
||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 843 TTCATCGGTGACCCGTTTA-CCCGGATTCGTAACCGGAGCCCCGACTCAGTCCTCTTCTT 901
Query 1098 C-TCTAAACACACTAGTAGCAAGAAAAG-CTCCGACGTTAATCCGGCGATTTTGATCGGT 1155
| ||| || | || | |||| || | |||||| |||||||||| |||||||||||||
Sbjct 902 CTTCTCAA-A-AC----A-CAAG-AACGCCTCCGAGGTTAATCCGGAGATTTTGATCGGT 953
Query 1156 GGAGCTAAAGGAATCAGGAGATTATCGAGCTCGATGCACACTGAGATTGTGAGAGCGACG 1215
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 954 GGAGCTAAAGGAATCAGGAGATTGTCGAGCTCCATGCATACTGAGATTGTGAGAGCGACG 1013
Query 1216 ATTCAGCAGCAGCATAAGAAGAAGAACTCGGTTACGGAA-T--CGG--T-GGTTCTG--- 1266
|| | | | |||||||||||||||||||||| | ||| | |||| ||
Sbjct 1014 AT---G-A------T--GAAGAAGAACTCGGTTACGGAAGTAACGGAATCGGTTGTGTTG 1061
Query 1267 AGTCAACTCGTTGGGAATGTTCACATGACGAAGAATTTTGAGGTGGTTACGAGTGAGTCG 1326
||||||||||| ||||||||||| ||||||||||| ||| | |||||| ||||||||
Sbjct 1062 AGTCAACTCGTCGGGAATGTTCATATGACGAAGAACTTTCAAGTGGTTTTAAGTGAGTCA 1121
Query 1327 GTGGTACCGGAAGCGA 1342
||||| ||||||||||
Sbjct 1122 GTGGTGCCGGAAGCGA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5