BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486202 Length=1154 Score E Sequences producing significant alignments: (Bits) Value AT3G57540.1 | Symbols: | Remorin family protein | chr3:2130139... 1687 0.0 AT2G41870.1 | Symbols: | Remorin family protein | chr2:1747086... 396 3e-109 > AT3G57540.1 | Symbols: | Remorin family protein | chr3:21301397-21303061 REVERSE LENGTH=1254 Length=1254 Score = 1687 bits (913), Expect = 0.0 Identities = 1084/1164 (93%), Gaps = 22/1164 (2%) Strand=Plus/Plus Query 1 GTTACACGAATTATTAAATCCTAATCATTGATTATTTATGCCTTACCTTGTATCTTCTCC 60 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||| Sbjct 1 GTTACACGAATTATTAAAACCTAATCATTGATTATTTATTCCTGACCTTGTTTCTTCTCC 60 Query 61 TTCCATCACCTAATTATAATCAGACCTAAACTATCTAATTGCAACACTCCACTACTAACT 120 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| Sbjct 61 TTCCATCACCTAATTATAATCAGACCTAAACTAGCTAATTACAACACTCCACTACT-ACT 119 Query 121 ACTACTACAACCCTTCTGATGTTGACTTTGTACGGTCAAGAAAGTTCAACGGAGAACTCC 180 ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 120 ACTACTACAACTCTTCTGATGTTGACTTTGTACGGTCAAGAAAGGTCACCGGAGAACTCC 179 Query 181 ACCACAAGTACGGCCGATGCTTCCGATCGCCGGGATGAGACACCGCCGTCGGAAACCGTC 240 |||||||||||| |||||||||||||||||||||||||||| ||| ||||||| | ||| Sbjct 180 ACCACAAGTACGACCGATGCTTCCGATCGCCGGGATGAGACGCCGTCGTCGGAGATAGTC 239 Query 241 GTGAGAGATATTCACGCGATGACAACGACGACGGAGCTTACTCGGCCACAACAAAGGGG- 299 ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 240 GTGAGAGATATTCACGCGATGACGACGACGACAGAGCTTACTCGGCCACAACAAAGGGGA 299 Query 300 --AGGAGGAGGATACTTGTCTCCGTCGAGGTCTATTGCTTTTAGCGACGGAACTACTTCT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCAGGAGGAGGATACTTGTCTCCGTCGAGGTCTATTGCTTTTAGCGACGGAACTACTTCT 359 Query 358 TCCGGTGAGAATTTCACCACCGTGAGCAGAGAATTCAACGCTCTAGTTATCGCCGGATCT 417 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 360 TCCGGTGAGAATTTCACCACCGTGAGCAGAGAGTTCAACGCTCTAGTCATCGCCGGATCT 419 Query 418 TCCATGGACAACAACAGTAACGGAAGTAACCAGTCAGGTGGTCATCGTGACGTCATACGT 477 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 420 TCCATGGACAACAACAGTAACGGAACTAACCAATCAGGTGGTCATCGTGACGTCATACGT 479 Query 478 GACGAAAGGAACGAGCTGACTAGGATCGGCGAAAACGATGACGTTGGTTATCATGATCAG 537 || ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 480 GATGAAAGAAACGAGCTGACTAGGATCGGCGAAAACGATGACGTTGGTGATCATGGTCAG 539 Query 538 GTGCCTGAGGAAGATACGAATCCTTGGGCGATTGTACCGGACGGTTACAATAACCGGGAT 597 ||||||||||| ||| | ||||| ||||||||||||||||||| |||||| |||||||| Sbjct 540 GTGCCTGAGGAGGATTCAAATCCATGGGCGATTGTACCGGACGATTACAACAACCGGGAC 599 Query 598 GGTTCTGAGAATAATATTGTGTTGACGTCGTCATCGGGTGGTCAGAATCGGATGGTGACG 657 ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||||||||| Sbjct 600 GGTTCAGAGAATAATATTGTGTTG--G-CGTCATCAGGTGGTCAGAACCGGATGGTGACG 656 Query 658 ACTGCTTCGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAA 717 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 657 ACTGCTTCGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCAAAGATAACGGCGTGGCAA 716 Query 718 ACGGCGAAAGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGT 777 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 ACGGCGAAGGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGT 776 Query 778 TGGTTGAATGAGCAGGTTCATAAAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAATTG 837 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 777 TGGTTGAATGAGCAGGTTCATAGAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAACTG 836 Query 838 GAAGATAGGAGAGCAAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAAAGG 897 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 837 GAAGATAGGAGAGCGAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAGAGG 896 Query 898 AAGGCGGAGGAGAGGAGAGCGACGGCAGAAGGAAAAAGAGGGACGGAGGTTGCGAGGGTG 957 |||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||| Sbjct 897 AAGGCGGAGGAGAGGAGAGCCACGGCGGAAGGTAAACGAGGGACGGAGGTTGCGAGGGTT 956 Query 958 CTTGAAGTCGCTAATCTAATGAGAGCCGTGGGACGACCTCCGGCCAAACGATCCTTCTTC 1017 |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 957 CTTGAAGTTGCTAATCTCATGAGAGCCGTTGGACGACCTCCGGCCAAACGATCATTCTTC 1016 Query 1018 ACT-TTCTCCTAGCTAAGCTATTGCTAGTTTTAATTACATCAAAATTTCTTAATATATAT 1076 || || |||||||||||||||| ||||||||| ||||||| |||| ||| ||||||||| Sbjct 1017 TCTCTT-TCCTAGCTAAGCTATTACTAGTTTTAGTTACATCCAAATGTCTCAATATATAT 1075 Query 1077 AGGCTGCAAACGGACATTTTCTGATGGGAATCAATGTGTGTATA--TATA----GAATGT 1130 ||||| | | ||||||||| ||||||||||||||| |||| |||| |||||| Sbjct 1076 AGGCT--A--C---CATTTTCTGTTGGGAATCAATGTGTATATAACTATATATAGAATGT 1128 Query 1131 AAGAGTTTTAAAGGTACTGATATA 1154 |||||||||||||||||||||||| Sbjct 1129 AAGAGTTTTAAAGGTACTGATATA 1152 > AT2G41870.1 | Symbols: | Remorin family protein | chr2:17470866-17472936 REVERSE LENGTH=1495 Length=1495 Score = 396 bits (214), Expect = 3e-109 Identities = 316/366 (86%), Gaps = 4/366 (1%) Strand=Plus/Plus Query 665 CGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAAACGGCGA 724 ||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||| | Sbjct 878 CGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAGACGGCAA 937 Query 725 AAGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGTTGGTTGA 784 || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct 938 AACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAGACGCCGTTATTAACGGTTGGTTTA 997 Query 785 ATGAGCAGGTTCATAAAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAATTGGAAGATA 844 |||| || ||| | || || |||||||||||||||||||| |||||||| | || || | Sbjct 998 ATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGAAAATTGAGAGGAAGCTAGAGGAGA 1057 Query 845 GGAGAGCAAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAAAGGAAGGCGG 904 | | |||||| |||||||||||||| |||||||| ||||| ||||| || ||||| |||| Sbjct 1058 GAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATGTGGCGAAAGCGCAGAGGAAAGCGG 1117 Query 905 AGGAGAGGAGAGCGACGGCAGAAGGAAAA-AGAGGGACGGAGGTTGCGAGGGT-GCTTGA 962 ||||||| |||||||||||||| || ||| |||||||| |||||||| | || | |||| Sbjct 1118 AGGAGAGAAGAGCGACGGCAGA-GGCAAAGAGAGGGACAGAGGTTGCAAAAGTAG-TTGA 1175 Query 963 AGTCGCTAATCTAATGAGAGCCGTGGGACGACCTCCGGCCAAACGATCCTTCTTCACTTT 1022 ||| |||||||| ||||||||| | ||||| ||||| |||||||| ||||||||| |||| Sbjct 1176 AGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTGCCAAACGCTCCTTCTTCTCTTT 1235 Query 1023 CTCCTA 1028 |||||| Sbjct 1236 CTCCTA 1241 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56626214760 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5