BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486239

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57870.1 | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | su...  1435    0.0   
  AT5G02244.1 | Symbols:  | Pseudogene of AT3G57870; AHUS5 (SUMO ...   422    4e-117


> AT3G57870.1 | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | 
sumo conjugation enzyme 1 | chr3:21428496-21430200 REVERSE LENGTH=908
Length=908

 Score = 1435 bits (777),  Expect = 0.0
 Identities = 860/898 (96%), Gaps = 14/898 (2%)
 Strand=Plus/Plus

Query  1    GATagagattggagagcgagcgagacaaatcagaagagagagagagagattgagatattg  60
            |||||||||||||||||||||||||||||||     ||| ||||||||||| ||||||||
Sbjct  1    GATAGAGATTGGAGAGCGAGCGAGACAAATC-----AGA-AGAGAGAGATTTAGATATTG  54

Query  61   tagagtgagattct-aa-agagagagacagagagatATGGCTAGTGGAATCGCTCGTGGT  118
            |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  55   TAGAGTGAGATTCTAAAGAGAGAGAGAGAGAGAGATATGGCTAGTGGAATCGCTCGTGGT  114

Query  119  CGTTTAGCTGAAGAGAGGAAATCGTGGAGGAAGAATCATCCTCATGGTTTTGTGGCAAAG  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  CGTTTAGCTGAAGAGAGGAAATCGTGGAGGAAGAATCATCCTCATGGTTTTGTGGCAAAG  174

Query  179  CCGGAGACGGGGCAGGATGGAACTGTGAATCTAATGGTGTGGCATTGCACTATACCTGGT  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  CCGGAGACGGGGCAGGATGGAACTGTGAATCTAATGGTGTGGCATTGCACTATACCTGGT  234

Query  239  AAAGCTGGGACTGATTGGGAAGGTGGATTCTTCCCATTAACGATGCACTTCAGTGAGGAT  298
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  235  AAAGCTGGGACTGATTGGGAAGGTGGATTCTTTCCATTAACGATGCACTTCAGTGAGGAT  294

Query  299  TATCCGAGCAAACCTCCGAAATGCAAATTCCCACAAGGGTTTTTCCACCCTAATGTCTAT  358
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  295  TATCCGAGCAAACCTCCGAAATGTAAATTTCCACAAGGGTTTTTCCACCCTAATGTCTAT  354

Query  359  CCATCTGGAACTGTCTGTCTCTCCATCCTTAACGAGGATTACGGGTGGAGACCAGCCATC  418
            ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct  355  CCATCTGGAACTGTCTGTCTCTCTATCCTTAACGAGGATTATGGATGGAGACCAGCCATC  414

Query  419  ACCGTGAAGCAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCTAATCCCGCTGAC  478
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  415  ACCGTGAAGCAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCGAATCCCGCTGAC  474

Query  479  CCTGCACAGACTGATGGTTATCATCTTTTCTGTCAGGATCCAGTTGAGTACAAGAAAAGG  538
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  475  CCTGCACAGACAGATGGTTATCATCTCTTCTGTCAGGATCCAGTTGAGTACAAGAAAAGG  534

Query  539  GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAAAACCTCAAAAGAGAGAACGCA  598
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  535  GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAAAACCTCAAAAAAGAGAACGCA  594

Query  599  CCAAAACTGATGACATGCTCTGAATATTTTCTCGTCTTGTGTCATTGTGTTTAGATGTCA  658
            ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct  595  CCAAAACTGATGACAAGCTCTGAATATTTTCTCGTCTTGTGTCATTATGTTTAGATGTCA  654

Query  659  TTGGGTGATTGAAAACTCCTCATTTTGGCACCTTAAGACACTGGAATCTATTTATTTGCG  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  655  TTGGGTGATTGAAAACTCCTCATTTTGGCACCTTAAGACACTGGAATCTATTTATTTTCG  714

Query  719  AAGAAACTCAGTTCtttttttCTCTATTTAACTGTTAATATTCTTGGTACTGATTCAGTT  778
            || |||  |  | ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  715  AAAAAAAAC--T-CTTCTTT-CTCTATTTAACTGTTAATATTCTTGGTACTGATTCAGTT  770

Query  779  GGTGTTGCTTCTATATAATACATAACTATGTTCTCTGGTCGTTCATGAGTGTTGTCCAAA  838
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  771  GGTGTTGCTTCTATATAATACATAATTATGTTCTCTGGTCGTTCATGAGTGTTGTCCAAA  830

Query  839  TTCTACCAAGTTAAGTATATGAAGTCTTCATTCCAAATAGTAACGAATCTTAGTTGTG  896
            |||||| |||| ||  ||||||||||||||||||| | ||||||||||||||||||||
Sbjct  831  TTCTACTAAGTGAA--ATATGAAGTCTTCATTCCATAGAGTAACGAATCTTAGTTGTG  886


> AT5G02244.1 | Symbols:  | Pseudogene of AT3G57870; AHUS5 (SUMO 
CONJUGATION ENZYME 1); ubiquitin-protein ligase | chr5:453814-454294 
FORWARD LENGTH=324
Length=324

 Score =  422 bits (228),  Expect = 4e-117
 Identities = 306/339 (90%), Gaps = 24/339 (7%)
 Strand=Plus/Plus

Query  248  ACTGATTGGGAAGGTGGATTCTTCCCATTAACGATGCACTTCAGTGAGGATTATCCGAGC  307
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ACTGATTGGGAAGGTGGATTCTTTCCATTAACGATGCACTTCAGTGAGGATTATCCGAGC  60

Query  308  AAACCTCCGAAATGCAAATTCCCACAAGGGTTTTTCCACCCTAATGTCTATCCATCTGGA  367
            ||||||||||||||||||||    |          |||||||||||||||||||||||||
Sbjct  61   AAACCTCCGAAATGCAAATT----C----------CCACCCTAATGTCTATCCATCTGGA  106

Query  368  ACTGTCTGTCTCTCCATCCTTAACGAGGATTACGGGTGGAGACCAGCCATCACCGTGAAG  427
            |||||||||||||| |||||||||||||||||| | |   |||||||||| |||||||||
Sbjct  107  ACTGTCTGTCTCTCTATCCTTAACGAGGATTAC-GTTATTGACCAGCCATTACCGTGAAG  165

Query  428  CAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCTAATCCCGCTGACCCTGCACAG  487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  166  CAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCTAATCCCGCTGACCCTGCACAG  225

Query  488  ACTGATGGTTATCATCTTTTCTGTCAG-----G-AT---CCAGTTGAGTACAAGAAAAGG  538
            || ||||||||||||| ||||||||||     | ||   |||||||||||||||||||||
Sbjct  226  ACCGATGGTTATCATCATTTCTGTCAGATTTTGCATGATCCAGTTGAGTACAAGAAAAGG  285

Query  539  GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAA  577
            |||||||||||||||||||||||||||||||||||||||
Sbjct  286  GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43753942037


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5