BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486249 Length=1381 Score E Sequences producing significant alignments: (Bits) Value AT3G57990.1 | Symbols: | unknown protein; Has 1497 Blast hits ... 1338 0.0 > AT3G57990.1 | Symbols: | unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). | chr3:21470002-21471486 REVERSE LENGTH=1485 Length=1485 Score = 1338 bits (724), Expect = 0.0 Identities = 885/960 (92%), Gaps = 21/960 (2%) Strand=Plus/Plus Query 74 ATGAAGGCATCGATGAAGTTTCGTGAAGAGCAAAAGCCTCTTTTTAGGGCTAAGGTTCCT 133 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 140 ATGAAGGCATCGATGAAGTTTCGTGAAGAGCAAAAGCCTCTTTTTAGGGCTAAAGTTCCT 199 Query 134 TTGAGTATCTTAGGTTTACCTTTTCAATCTGGTATCGTCGCCGGAGAATCCAAGGAGCTC 193 || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 200 TTAAGCATCTTAGGTTTACCCTTTCAATCTGGAATCGTCGCCGGAGAATCCAAGGAGCTC 259 Query 194 AGTCTCAATCTCTCCACTTTCTTCGAATCTGGACCTTCTCTCAAGGTCGCTTACCGTCCA 253 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 260 AGTCTCAATCTCTCCACTTTCTTCGAATCTGGCCCTTCTCTCAAAGTCGCTTACCGTCCA 319 Query 254 AACGATTCGTGGAACCCTTTCTCTCTAATCGTCAAAACCGGATCGGGATCGTTCGGTTCT 313 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 AACGATTCGTGGAATCCTTTCTCTCTAATCGTCAAAACCGGATCGGGATCGTTCGGTTCT 379 Query 314 CCGATTTCAAGCTCTATGCTCATGAGCGCTGAATTCAATCTCCTAGGTAAAGGAAACCCT 373 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 380 CCGATTTCAAGCTCTATGCTCATGAGCGCTGAATTCAATCTCCTAGGTCAAGGAAACCCT 439 Query 374 AGCTTTATGCTTCACTTCAAACCTCAATTCGGCGATTTCTCTATCAAAAAGTCTCATTCG 433 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 AGCTTTATGCTCCACTTCAAACCTCAATTCGGCGATTTCTCTATCAAAAAGTCTCATTCT 499 Query 434 TCGTCTCAA----ACA--AATCTGATCAAATCGATGAATGGATCTGTTTCGGAAGATGAT 487 |||||| | | | ||| |||||||||||||||||||||||||||| ||||||||| Sbjct 500 TCGTCTGGATTTGAGAGGAATTTGATCAAATCGATGAATGGATCTGTTTCCGAAGATGAT 559 Query 488 TCTTCGATTGAGGTGGTGGATACTCCAGCGGTCAATGGATGCGGCGGAGGATTTCGAAAA 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 560 TCTTCGATTGAGGTGGTGGATACTCCAGCGGTCAATGGATGCGGCGGAGGATTTAGAAAA 619 Query 548 GTCACGGTTCTGCCGTCAACTTCTGCTGGAGATATCGCTGGATTGTTATCCGGCGTTGAG 607 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 620 GTCACGGTTCTGCCGTCAACTTCTGCTGGAGATATCGCTGGATTGTTATCTGGCGTTGAG 679 Query 608 GTTGCGGCGAGGACCTCTTTGCCTGTGAGAGGACGCGCCGTTTTGAATTTCCGGTGGGGC 667 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 680 GTTGCGGCGAGGACGTCTCTGCCTGTGAGAGGACGCGCCGTTTTGAATTTCCGGTGGGGC 739 Query 668 GTTAGGGTTCCTACGGAGATCAGACGCGATTTCGATCCAACGGCTGCGATTTCGCTGAGG 727 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 740 GTTAGGGTTCCTACGGAGATCAGACGCGATTTCGATCCAACGGCTGCTATTTCGTTGAGG 799 Query 728 AGATTCCCGTTTTTGGTGATGAATAAAATCGGAATCGAACACGTGGACGGCTCAGATGCT 787 |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 800 AGATTCCCTTTTTTGGTGATGAATAAAATAGGAATCGAACACGTGGACGGCGCAGATGCT 859 Query 788 AAAGTGACCAAACCCAC-GAGCGATCCGGGTCAGGTCACAACAAGTGG-TGACGTGG-CG 844 |||||||||||| |||| | | ||||||||| | || | || | | || | Sbjct 860 AAAGTGACCAAATCCACTG-GTGATCCGGGTAAAGTTTCGGGTCC-GGCTCA-GTTCACA 916 Query 845 G-AGGTG-TGTT-TGGCCGTGAATCGGCAGATGGAGGAGCTTCGAACGGAGAACAAGCAG 901 | ||| || |||| | || || ||| ||||||||||||||||||||||||||| Sbjct 917 ACAAGTGGTGACGTGGC-G-GA---GGT-GATAGAGGAGCTTCGAACGGAGAACAAGCAG 970 Query 902 TTAAAGAGAGCCGTCGAAGATCTCCGGGAAGTTATATCAACCGTCCGTCCATACTCGCCG 961 |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 971 TTAAAGAGAGCCGTTGAAGATCTCCGGGAAGTAATATCAAACGTCCGTCCATACTCGCCG 1030 Query 962 GCGACAATTGATTACGGATCACACTCAAAGTACCGCGAACCCGAGAGGAGCAACAACAAC 1021 |||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||| Sbjct 1031 GCGACAATTGATTACGGATCACACTCGAAGTATCGCGAATCCGAGAGGAACAACAACAAC 1090 Score = 523 bits (283), Expect = 2e-147 Identities = 349/379 (92%), Gaps = 11/379 (3%) Strand=Plus/Plus Query 1012 CAACAACAACGGGAGATCGAGAGCTGATCGGTGGAGCAGCGAGAGAACGACGACGTCTGA 1071 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1108 CAACAACAACGGGAGATCGAGAGCTGATCGGTGGAGCAGCGAGAGAACGACAACGTCTGA 1167 Query 1072 TTACGGCGGGAAGAAAAGCAAGGAAGAGGGCGATGTGGCTGAGGAGCTGAAGAAAGCTTT 1131 |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1168 TTACGGTGGGAAGAAAAGCAAGGAAGAGGGCAATGTAGCTGAGGAGCTGAAGAAAGCTTT 1227 Query 1132 GAAAGGAGCCGCTTGAAGCTTCTATGGCGGCTATTTGGTAATCACAGGCTTTATTCGAAT 1191 ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||| Sbjct 1228 GAAAGGAGCTGCTTGAAGCTTCTATGGCGGCTATT-GGTAATCGCAGGCTTTACTCGAAT 1286 Query 1192 TCCAACTACATTTGTCGAC-TTAATCAGCTATGGCTTTTGTATATATATGCGTTGAATCT 1250 | ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| | Sbjct 1287 TACAATTACATTTGTCGACCTTAATCAGCTATTGCTTTTGTATATATATGCGTTGAAT-T 1345 Query 1251 -TCTGGATTAGATTTGCAGAACTTGTTTTGAATCTTTTGATGGAATCTTCAGAGTTTTAT 1309 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 1346 ATCTGGATTAGATTTGCACAACTTGTTTTGAATCTTTTGATGGAATCTTCAGAGTTTTGT 1405 Query 1310 ATGAGATTATGCTTTTGAACTCTCTTTATGGAACTGATAAGCATGTTGA--GTTGA-TT- 1365 |||||||||||||||| || ||||||||| ||||| ||| ||| ||||| ||||| || Sbjct 1406 ATGAGATTATGCTTTTCAATTCTCTTTATTGAACTTATATGCAGGTTGATTGTTGAATTG 1465 Query 1366 -T--GAATCAGTATTATAT 1381 | ||||||||||| ||| Sbjct 1466 ATTTGAATCAGTATTCTAT 1484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68021738475 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5