BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486251 Length=1098 Score E Sequences producing significant alignments: (Bits) Value AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475... 1637 0.0 > AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475805-21477569 REVERSE LENGTH=1177 Length=1177 Score = 1637 bits (886), Expect = 0.0 Identities = 983/1030 (95%), Gaps = 6/1030 (1%) Strand=Plus/Plus Query 2 TTCAATGGCATTGATCCAACGTGGTTCGGTATCTGGGACCTCTGCGGTTCGATTGAGCTT 61 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 103 TTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGAGCTT 162 Query 62 CTCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCACCGTCAAGGGTTTCTCTCAATTT 121 ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 163 CTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTCAATTT 222 Query 122 TCAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAGCTATGGTTCAAGACAC 181 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 223 TCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGAGCTATGGTTCAAGACTC 282 Query 182 GGTTCAAGGGATTCCTTCGGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 241 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 283 GGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 342 Query 242 GCTTATTCTCGCCTTCAATGATGCTGGGGGATTTGAGGCTCTAGTTACTGGGAAGATCAC 301 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 343 GCTTATTCTCGCCTTCAATGATGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATCAC 402 Query 302 TGATATGCAAAAGATTGATGTGAATGAGAGGATAACCACTCTTGAGCGGCTTAATCCAAC 361 ||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| Sbjct 403 TGATATGCAAAAGATTGATGTCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAAC 462 Query 362 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGA-T 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 463 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGAGT 522 Query 421 CTAATACGCCTGGTTCACTTGCTGTTCGGGTTATATTCGAGAGGTTTCCTTCGACATTGG 480 | || || |||||||| ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 523 C-AACACTCCTGGTTCTCTTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGG 581 Query 481 TGAGTCTATCCAGTATGGAGATAGTT-ATTAAGGATAATAACACAATGGCAACAGCAAAC 539 |||||||||||| |||||| ||| || ||||| ||||||||||||| ||||||||||||| Sbjct 582 TGAGTCTATCCAATATGGAAATA-TTCATTAAAGATAATAACACAAAGGCAACAGCAAAC 640 Query 540 ATCAAACTCCTAAACTCGATAGAAAACAAAATCATCCTGTCATCGAAATTGACAATAGAA 599 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 641 ATCAAACTCCTAAACTCGATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAA 700 Query 600 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGAATGCTCGAGTCGCCAACGGTTATT 659 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 701 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGATTGCTCGAGTCGCCAACGGTTATT 760 Query 660 GAAGAAGCAGTACCTGACCAGCTAAGAGGTTTATTGGGTCAAGCTTCTACCACGTTGCAG 719 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 761 GAAGAAGCAGTACCTGACCAACTAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAA 820 Query 720 CAGCTTCCTGCACCTATCAAGGATACTCTAGCCAATGGTCTAAGAATTCCCCTTGGTGGA 779 |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 821 CAGCTTCCTGAACCTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGGA 880 Query 780 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 940 Query 840 ACCGCAGGAGTGCCTGAAGTTCTAACAAGGGTTGAAACATCGTCTTCGATGTCTTCATCG 899 |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| Sbjct 941 ACCGCAGGAGTGCCTGAAGTTCTAACGAGGGTGGAAACATCGTCTCCGATGTCTTCATCG 1000 Query 900 AGCGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGTTTCTCTTGTTACTCTGATTC 959 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1001 AGTGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGGTTCTCTTGTTACTCTGATTC 1060 Query 960 TCTCTGTAAATGTAAGAACAAAAAGTGTATCCAACTTACCAACCTCAAC-ACAGTATATC 1018 |||||||||||||||||||||||||||||| ||||||||| |||||| | | |||||||| Sbjct 1061 TCTCTGTAAATGTAAGAACAAAAAGTGTATACAACTTACCGACCTCA-CTATAGTATATC 1119 Query 1019 ACCGGCCACA 1028 |||| |||| Sbjct 1120 TCCGGACACA 1129 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53814984240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5