BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486298
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58490.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 2045 0.0
> AT3G58490.1 | Symbols: | Phosphatidic acid phosphatase (PAP2)
family protein | chr3:21632812-21635101 FORWARD LENGTH=1548
Length=1548
Score = 2045 bits (1107), Expect = 0.0
Identities = 1389/1514 (92%), Gaps = 63/1514 (4%)
Strand=Plus/Plus
Query 1 TCTCTGTCTTTCTCTTTCTCTCTGCCAGCAAACATCCATTGGAGCTCCTCACTATACGGC 60
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 25 TCTCTCTCTCTCTCTTTCTCTCTGCCAGCGAACATCCATTGGAGCTCCTCACTATACGGC 84
Query 61 TGAagag--agagagagagag-agaC--C---A-T-----ACAAAAGAC--------T-- 96
||||| |||| ||||||| |||| | | | ||||||||| |
Sbjct 85 CCAAGAGATAGAGGGAGAGAGAAGACATCATAATTCCCAAACAAAAGACTTTGGGTATAA 144
Query 97 --TTGGG----TTGACTTTGTGAAACCTAGCCAGAAAATCTACCAACAACTGCCTCAAAT 150
||||| |||||||||||||||||| |||||||||||| | |||||| ||| ||
Sbjct 145 AATTGGGTTTATTGACTTTGTGAAACCTACCCAGAAAATCTA-C--CAACTGTCTCGAAG 201
Query 151 TCTCTCTCCTCTTTCTTGAAACCGGG-AA-A--GA-GG--G-------AG--G--GAAGA 192
||||||||||||||||||||| |||| || | || || | || | |||||
Sbjct 202 TCTCTCTCCTCTTTCTTGAAA-CGGGAAAGAGGGAGGGAAGAACAATAAGAAGATGAAGA 260
Query 193 AGATTCTAGAAAGATCAATGGAAGGCTCAGGGACATGGCAAGGCTTGATCCTCGTTGGTA 252
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 261 AGATTCTAGAAAGATCAATGGAAGGTTCAGGGACATGGCAAGGCTTGGTGCTCGTTGGTA 320
Query 253 TTGTCACTTGGATCTGTGCTTCTTCTTATCTCAAATTTACCCATAAATTTAGATCTCTCT 312
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 321 TTGTCACATGGATCTGTGCTTCTTCTTATCTTAAATTTACCCATAAATTTAGATCTCTCT 380
Query 313 TACAACCATGGGTCGCTCGTCAAGTCGTCGGTGGTCTTCCTCTCATTCTCAGAATCCAGA 372
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 381 TACAACCATGGGTCGCTCGTCAAGTCGTTGGTGGTGTCCCTCTCATTCTCAGAATCCAGA 440
Query 373 AATGTCAGAATGGAGTGTTGGATGCTTTCTTCTCAGGACTATCATGTGTTGTCTCTGTGC 432
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 441 AATGTCAGAATGGAGTGTTGGATGCTTTCTTCTCAGGGCTATCTTGTGTTGTCTCTGTTC 500
Query 433 CCTTTTACACTGCTTTCTTGCCTTTGCTCTTCTGGAGTGGACATGGTAGATTGGCTAGGC 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CCTTTTACACTGCTTTCTTGCCTTTGCTCTTCTGGAGTGGACATGGTAGATTGGCTAGGC 560
Query 493 AGATGACTCTCTTGATTGCATTCTGTGATTACTTGGGAAATTGCATTAAGGATGTGGTAT 552
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 561 AGATGACTCTCTTGATTGCATTCTGTGATTACTTGGGAAACTGCATTAAGGATGTGGTAT 620
Query 553 CTGCTCCTAGGCCAAGCTGCCCACCGGTTAGAAGGATTACTGCCACAAAAGATGAGGAAG 612
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 621 CAGCTCCTAGGCCAAGCTGTCCACCGGTTAGAAGGATTACTGCCACTAAAGATGAGGAAG 680
Query 613 ACAATGCAATGGAATATGGCTTGCCTTCTTCGCATACTCTTAACACTGTTTGTTTATCCG 672
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 681 ACAATGCAATGGAATATGGCTTGCCTTCTTCACATACTCTTAACACTGTTTGTTTATCTG 740
Query 673 GCTATCTACTCCATTATGTGTTATCCTCCTTGGAACACGAAACTGTGTCTATCCAATACT 732
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct 741 GCTATCTACTCCATTATGTGTTATCCTCCTTGGAATACGAAAGTGTGTCTATCCAGTACT 800
Query 733 ATGGATTTGCCCTTGCTTGTTTGCTGGTAG-TCCTAATCGCCTTCGGAAGGATTTACTTG 791
||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||
Sbjct 801 ATGGATTTGCCCTTGCTTGTTTGTTGGTAGCTC-TAATCGCCTTCGGAAGGGTTTACTTG 859
Query 792 GGTATGCACAGTGTCGTCGATATCATCAGTGGTCTTGCCATAGGAGTTCTGATTCTAGGT 851
|||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 860 GGTATGCATAGTGTCGTCGATATCGTCAGTGGTCTTGCCATAGGAGTCCTGATTCTAGGT 919
Query 852 CTTTGGCTTATCGTCAACGAAAAAATTGACGATTTCATTACATCAAAACAGAACGTTAGC 911
|||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 920 CTTTGGCTTACCGTCAATGAAAAACTTGACGATTTCATTACATCAAAACAGAACGTTAGC 979
Query 912 TCCTTCTGGACCGCGTTGAGTTTCTTATTGCTCTTTGCTTATCCAACCCCTGAGCACCCA 971
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 980 TCTTTCTGGACCGCGTTGAGTTTCTTATTGCTCTTTGCTTATCCGACCCCTGAGCACCCA 1039
Query 972 ACTCCTAGCTACGAGTACCACACTGCCTTCAACGGGGTTACCCTAGGGATTGTTACCGGA 1031
||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 1040 ACTCCTAGCTACGAGTACCACACAGCCTTCAACGGGGTTACCTTAGGAATTGTTACCGGA 1099
Query 1032 GTGCAGCAAACGTACAGTCAATTCCACCACGAAGCTGCTCCACGAATCTTCTCACCAGAG 1091
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GTGCAGCAAACGTACAGCCAATTCCACCACGAAGCTGCTCCACGAATCTTCTCACCAGAG 1159
Query 1092 CTCCCTATGTCATCCTACCTTGGTAGAGTCATGGTGGGGATACCGACAATACTCTTAGTG 1151
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1160 CTCCCTATTTCATCCTACCTTGGTAGAGTCATGGTGGGAATACCGACGATACTCTTAGTG 1219
Query 1152 AAGTTCTGCAGTAAATCTCTTGCAAAATGGACTTTACCAACAGTATCCAACGCACTTGGG 1211
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1220 AAGTTCTGCAGTAAATCTCTTGCAAAATGGACTTTACCAATGGTATCCAACGCACTTGGG 1279
Query 1212 ATTCCAATAAGATCCAGCATGTACATTCCCAAGCTCAAGGTCGATAAGGGGTATGCAAGT 1271
|||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1280 ATTCCAATAAGATCCAGCATGTACATTCCCAAGCTCAAGG--G----G---TATGCAAGT 1330
Query 1272 GGGAAGAAGCCAGACGAACCCAAGAACTCAGTTGGATATTTGCAGAAACTATGTGAGCTC 1331
||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 1331 GGGAAGAAGACAGACGAACCCAAGAATTCAGTTGGATATTTGCAGAAACTATGCGAGTTT 1390
Query 1332 TTGAGCCAGGACTCGTTTGATATTGATACTGGTATTAGGTTCTTCCAATATGCAGGCCTT 1391
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1391 TTGAGCCACGACTCGTTTGATATTGATACTGGTATAAGGTTCTTCCAATATGCAGGCCTT 1450
Query 1392 GCCTGGTCTGTTGTTGATCTTGTTCCTTCGCTATTCTCTTATGCTAACTTGTAGTGACAG 1451
|||||||| |||||||||||||||||||| ||||||||||| | ||||||||||| ||||
Sbjct 1451 GCCTGGTCCGTTGTTGATCTTGTTCCTTCACTATTCTCTTACGTTAACTTGTAGTAACAG 1510
Query 1452 TTCCATTGTGTGAT 1465
|| |||||||||||
Sbjct 1511 TTTCATTGTGTGAT 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5