BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486329
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58750.1 | Symbols: CSY2 | citrate synthase 2 | chr3:2172431... 3179 0.0
AT3G58740.1 | Symbols: CSY1 | citrate synthase 1 | chr3:2172077... 1779 0.0
AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:1780147... 1530 0.0
> AT3G58750.1 | Symbols: CSY2 | citrate synthase 2 | chr3:21724314-21727690
REVERSE LENGTH=2027
Length=2027
Score = 3179 bits (1721), Expect = 0.0
Identities = 1882/1957 (96%), Gaps = 22/1957 (1%)
Strand=Plus/Plus
Query 1 GATCCAAGCTGAATAATCTTATCACCGTTGATCTTTGGATAAACAATAGATCCG-TTTTC 59
|||| ||||||||||||||||||||||| || ||||||||||||||| |||||| |||||
Sbjct 4 GATCTAAGCTGAATAATCTTATCACCGTCGAGCTTTGGATAAACAATGGATCCGATTTTC 63
Query 60 AAAACTCTTACCCGTAGAGAATAAAAATCTCAGCTACTACCAAAATTAGGAAATTCAGGA 119
|| || |||||||| ||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 64 AATACACTTACCCGCAGAGAATAAAAATATCAGCTACTACCAAAATTAGCAAATGCAGGA 123
Query 120 TACAAAAGCCAAGTCACTTACCGAAAGATTGTttcttcttcttcttcttcttcgcttcct 179
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 124 TACAAAAGCCAAGTCACTTACCGCAAGATTG--T-TTCTTCTTCTTCTTCTTCGCTTCCT 180
Query 180 tccttTGAAATTGAATTCAG--A---ttttt---attttttGAGGGGAA-AAATGGAGAT 230
|||||||||||||||||||| | ||||| |||||||||| |||| ||||||||||
Sbjct 181 TCCTTTGAAATTGAATTCAGATATTTTTTTTAAAATTTTTTGAGAGGAAGAAATGGAGAT 240
Query 231 TTCGCAGAGAGTGAAAGCTCGATTAGCCGTTCTCACCGCGCATTTAGCGGTGTCTGATAC 290
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 TTCGCAGAGAGTGAAAGCTAGATTAGCCGTTCTCACCGCGCATTTGGCGGTGTCTGATAC 300
Query 291 CGTCGGATTGGAACAGGTGTTGCCGGCGATCGAGCCATGGTGCACATCGGCTCACATTAC 350
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 301 CGTCGGATTGGAACAGGTGTTGCCGGCGATCGCGCCATGGTGTACATCGGCTCACATTAC 360
Query 351 CGCTGCACCGCATGGATCGCTTAAAGGAAATTTGACGATCGTCGATGAGCGTACGGGGAA 410
||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 361 CGCTGCACCTCATGGATCACTCAAAGGAAACTTGACGATCGTCGATGAGCGTACGGGGAA 420
Query 411 GAAATATCAGGTCCCAGTCTCAGAGCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGAT 470
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAATATCAGGTCCCTGTCTCAGAGCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGAT 480
Query 471 AACGACGGGGAAAGATGACAAGGGGCTTAAGTTGTACGATCCAGGTTACTTGAACACGGC 530
|||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 481 AACGACGGGGAAGGATGATAAGGGGCTGAAGTTGTACGATCCTGGTTACTTGAACACGGC 540
Query 531 TCCGGTTCGATCTTCGATTTGTTACATCGACGGAGATGAAGGAATCCTACGTTATCGGGG 590
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 TCCGGTTCGATCTTCGATTTGTTACATCGACGGAGATGAAGGAATCTTACGTTATCGGGG 600
Query 591 ATACCCAATCGAAGAATTGGCTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCAT 650
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATACCCAATTGAAGAGTTGGCTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCAT 660
Query 651 GTATGGAAATCTGCCTTCTCAAAGTCAGCTAGCTGATTGGGAGTTTACGGTTTCTCAGCA 710
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 661 GTATGGAAATCTGCCTTCTCAAAGTCAGCTAGCTGATTGGGAGTTCACTGTTTCTCAGCA 720
Query 711 TTCAGCTGTGCCACAAGGAGTATTGGATATCATACAGTCCATGCCTCATGATGCACACCC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCAGCTGTGCCACAAGGAGTATTGGATATCATACAGTCCATGCCTCATGATGCACACCC 780
Query 771 AATGGGAGTTCTTGTGAGTGCCATGAGTGCACTTTCTATCTTTCATCCTGATGCAAATCC 830
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 781 AATGGGAGTTCTTGTGAGTGCCATGAGTGCACTTTCTATCTTTCACCCTGATGCAAATCC 840
Query 831 TGCTCTTAGTGGCCAAGATATTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCG 890
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGCTCTTAGTGGCCAAGACATTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCG 900
Query 891 TATTCTCGGAAAGGCACCAACAATTGCAGCGGCTGCTTATTTGAGGACGGCAGGCAGGCC 950
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 CATTCTCGGAAAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGACGGCAGGCAGGCC 960
Query 951 TCCTGTTCTTCCTTCGGGCAACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTC 1010
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCCTGTTCTTCCTTCGGCCAACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTC 1020
Query 1011 AATGGGAAATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTT 1070
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AATGGGCAATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTT 1080
Query 1071 CATACTGCATGCTGAACATGAGATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTC 1130
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CATACTGCATGCTGAACATGAAATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTC 1140
Query 1131 TAGTGGTGTTGATGTGTACACTGCTTGTGCTGGAGCTGTTGGAGCGCTTTATGGTCCACT 1190
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1141 TAGTGGTGTTGATGTGTACACCGCATGTGCTGGAGCTGTTGGGGCGCTTTATGGTCCACT 1200
Query 1191 TCATGGTGGCGCGAACGAGGCTGTGCTTAAGATGTTAGCAGAGATTGGGACAGCTGAAAA 1250
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 TCATGGTGGCGCGAACGAGGCCGTGCTTAAGATGTTAGCAGAGATTGGGACTGCTGAAAA 1260
Query 1251 TATTCCAGATTTCATTGAAGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGGACA 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TATTCCAGATTTCATTGAAGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGGACA 1320
Query 1311 TCGTGTTTACAAAAACTATGACCCCCGAGCAAAAGTCATaaaaaaaCTGGCAGATGAAGT 1370
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1321 TCGTGTTTACAAAAACTATGACCCCCGAGCAAAAGTTATAAAAAAACTGGCAGATGAAGT 1380
Query 1371 GTTCTCCATTGTTGGTAGGGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGC 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTTCTCCATTGTTGGTAGGGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGC 1440
Query 1431 ACTGTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTCTGG 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ACTGTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTCTGG 1500
Query 1491 ATTAATATATAGGGCAATGGGATTCCCACCAGAATTCTTCACAGTCCTATTCGCAGTCCC 1550
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1501 ATTAATCTATAGGGCAATGGGATTCCCACCAGAATTCTTCACAGTCCTGTTCGCAGTCCC 1560
Query 1551 GCGTATGGCTGGATACTTGTCGCACTGGCGTGAGTCGTTAGATGATCCTGACACTAGGAT 1610
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GCGTATGGCTGGATACTTGTCACACTGGCGTGAGTCGTTAGATGATCCTGACACTAGGAT 1620
Query 1611 CATGAGACCCCAACAGGCCTATACTGGAGTGTGGATGAGGCATTACGAGCCAGTGAGAGA 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CATGAGACCCCAACAGGCCTATACTGGAGTGTGGATGAGGCATTACGAGCCAGTGAGAGA 1680
Query 1671 ACGAACGTTATCAAGTGATTCAGG-TACGGATAAGTTTGGTCAAGTTTCCATTTCGAATG 1729
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1681 ACGAACGTTATCAAGTGATTC-GGATAAGGATAAGTTTGGTCAAGTTTCCATTTCGAATG 1739
Query 1730 CATCAAGAAGGCGTTTAGCTGGATCATCTGCCCTTTAGTCTCAATCCTACA-ACACACCA 1788
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 1740 CATCAAGAAGGCGTTTAGCTGGATCATCTGCCCTTTAGTCTCAATCCTA-ATACTCACCA 1798
Query 1789 ATAAAGAAGAAAACATTGGGATACCTCTGGGAAAATAAGAGAGTCTCCTCAACAAC-TGT 1847
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 1799 ATAAAGAAGAAAACATTGGGATACCTCTGGGAAAACAAGAGAGTCTTCTCAACAACATGT 1858
Query 1848 GTTGTTTTCTTTCTTTTATAATTAAACACTTAATAATACA-CCCTATTCTTATTGTTTGT 1906
|||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1859 GTTGTTTTCTTTCTCTTATTCTTAAACACTTAATAATACAACCCTATTCTTATTGTTTGT 1918
Query 1907 CTGTTATTT-AAAACT-TTATGATTTAATAATAATAA 1941
||||||||| |||| | ||||||||||||||||||||
Sbjct 1919 CTGTTATTTTAAAA-TGTTATGATTTAATAATAATAA 1954
> AT3G58740.1 | Symbols: CSY1 | citrate synthase 1 | chr3:21720773-21723790
REVERSE LENGTH=1800
Length=1800
Score = 1779 bits (963), Expect = 0.0
Identities = 1368/1559 (88%), Gaps = 46/1559 (3%)
Strand=Plus/Plus
Query 208 tttttGAGGGGAAAAATGGAGATTTCGCAGAGAG-TGAAAGCTCGATTAGCCGTTCTCAC 266
||||||||| || |||||||||||||| |||||| | | ||||||||||||||||||||
Sbjct 50 TTTTTGAGGTGACAAATGGAGATTTCGGAGAGAGCT-AGAGCTCGATTAGCCGTTCTCAA 108
Query 267 CGCGCA-TTTAGCGGTGTCTGATACCGTCGGATTGGAACAGGTGTTGCCGGCGATCGAGC 325
||||| || | | || |||| | | | || | ||||||||||| |||||||| |
Sbjct 109 TGCGCACTTGA-CAGTATCTG--A--G-CCGA----ATCAGGTGTTGCCAGCGATCGAAC 158
Query 326 CATGGTGCACATCGGCTCACATTACCGCTGCACCGCATGGATCGCTTAAAGGAAATTTGA 385
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 159 CATGGTGCACATCGGCTCACATAACCGCTGCACCGCATGGATCGCTTAAAGGAAATTTGA 218
Query 386 CGATCGTCGATGAGCGTACGGGGAA-GAAATATCAGGTCCCAGTCTCAGAGCATGGTACC 444
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 219 AGATCGTCGATGAGCGTACGGGGAATG-AATATCAGGTCCCAGTCTCAGAGCATGGTACC 277
Query 445 GTTAAAGCCGTTGATCTCAAGAAGATAACGACGGGGAAAGATGACAAGGGGCTTAAGTTG 504
|||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 278 GTTAAAACCGTTGATCTCAAGAAGATAACGACAGGGAAGGATGACAAGGGGCTTAACTTA 337
Query 505 TACGATCCAGGTTACTTGAACACGGCTCCGGTTCGATCTTCGATTTGTTACATCGACGGA 564
|||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 338 TACGATCCTGGTTACTTAAACACGGCTCCTGTTCGATCTTCGATTTCTTACATCGATGGA 397
Query 565 GATGAAGGAATCCTACGTTATCGGGGATACCCAATCGAAGAATTGGCTGAGAGCAGTACT 624
||||| ||||||||||||||||||||||||||| | || || |||||||||| ||||||
Sbjct 398 GATGAGGGAATCCTACGTTATCGGGGATACCCAGTTGAGGAGTTGGCTGAGAAAAGTACT 457
Query 625 TTTATTGAGGTTGCTTATCTCCTCATGTATGGAAATCTGCCTTCTCAAAGTCAGCTAGCT 684
| || |||||| |||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 458 TATACAGAGGTTACTTATCTCCTAATTTATGGGAATCTGCCTTCTCAAAGACAGCTAGCT 517
Query 685 GATTGGGAGTTTACGGTTTCTCAGCATTCAGCTGTGCCACAAGGAGTATTGGATATCATA 744
|||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 518 GATTGGGAGTTTGCGATTTCTCAGAATTCAGCTGTGCCACAAGGAGTATTGGATATGATA 577
Query 745 CAGTCCATGCCTCATGATGCACACCCAATGGGAGTTCTTGTGAGTGCCATGAGTGCACTT 804
|||||||||||| |||||| ||| ||| | |||| |||||| | ||| ||||||||||||
Sbjct 578 CAGTCCATGCCTAATGATGTACATCCAGTAGGAGCTCTTGTCACTGCAATGAGTGCACTT 637
Query 805 TCTATCTTTCATCCTGATGCAAATCCTG-CTCTTAGT-GGCCAAGATATTTACAAGTCAA 862
|| |||||| |||||||||||||||| | |||||| | |||| || | ||||||||||||
Sbjct 638 TCCATCTTTTATCCTGATGCAAATCC-GTCTCTTA-TGGGCCTAGGTGTTTACAAGTCAA 695
Query 863 AACAAGTTCGTGATAAACAGATTGTTCGTATTCTCGGAAAGGCACCAACAATTGCAGCGG 922
||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||| |
Sbjct 696 AACAAGTTCGTGATAAACAGATTGTTCGTGTTCTTGGACAGGCCCCAACAATTGCAGCAG 755
Query 923 CTGCTTATTTGAGGACGGCAGGCAGGCCTCCTGTTCTTCCTTCGGGCAACCTTTCTTATT 982
||||||||||||||| |||||||| ||||||||||| |||| | |||||||||||||||
Sbjct 756 CTGCTTATTTGAGGAAGGCAGGCAAGCCTCCTGTTCAACCTTTGAGCAACCTTTCTTATT 815
Query 983 CAGAGAATTTCCTCTATATGCTGGATTCAATGGGAAATAGGTCTTACAAGCCTAATCCTC 1042
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 816 CAGAGAATTTCCTCTATATGGTGGAATCAATGGGAGATAGGTCTTACAAGCCTAATCCTC 875
Query 1043 GTTTGGCTCGAGTGCTGGACATCCTCTTCATACTGCATGCTGAACATGAGATGAACTGCT 1102
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 876 GTTTGGCTCGAGTGCTGGACATCCTCTTCATACTGCAAGCTGAACATGAAATGAACTGCT 935
Query 1103 CTACTGCTGCTGCTCGGCATCTTGCCTCTAGTGGTGTTGATGTGTACACTGCTTG-TGCT 1161
|||||||||||||| |||| ||| |||||||||||| ||||||||| ||||| || | |
Sbjct 936 CTACTGCTGCTGCTAGGCACCTTTCCTCTAGTGGTGGTGATGTGTATACTGC-TGTTTCG 994
Query 1162 GGAGCTGTTGGAGCGC-TTTATGGTCCACTTCATGGTGGCGCGA-ACGAGGCTGTGCTTA 1219
|||| ||||||||| | |||||||||| ||||||||||| || | |||||| | |||
Sbjct 995 GGAGGTGTTGGAGC-CATTTATGGTCCCCTTCATGGTGGTGC-AGTTGAGGCTACGATTA 1052
Query 1220 AGATGTTAGCAGAGATTGGGACAGCTGAAAATATTCCAGATTTCATTGAAGGCGTGAAGA 1279
| |||||| ||||||||||||| | ||||||||||||||| ||||||||| |||||||||
Sbjct 1053 ACATGTTATCAGAGATTGGGACTGTTGAAAATATTCCAGAGTTCATTGAAAGCGTGAAGA 1112
Query 1280 A-CAGAAAGAGGAAGATGTCAGGTTTTGGACATCGTGTTTACAAAAACTATGACCCCCGA 1338
| || ||||||| | |||| ||||||||||| || ||||||||||||| || ||| ||
Sbjct 1113 ATAAG-AAGAGGAGGTTGTCGGGTTTTGGACACCGCATTTACAAAAACTACGATCCCAGA 1171
Query 1339 GCAAAAGTCATaaaaaaaCTGGCAGATGAAGTGTTCTCCATTGTTGGTAGGGATCCTCTC 1398
| ||||||| | || |||||||| |||||||||||||||||| |||| |||||||||||
Sbjct 1172 GGAAAAGTCGTTAAGAAACTGGCGGATGAAGTGTTCTCCATTCTTGGAAGGGATCCTCTG 1231
Query 1399 ATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGCACTGTCTGATGAATATTTTGTTAAGAGA 1458
| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1232 GTTGAGGTAGGAGATGCTCTAGAGAAGGCGGCACTTTCTGATGAATATTTTGTTAAGAGA 1291
Query 1459 AAGCTGTACCCAAATGTTGATTTCTACTCTGGATTAAT-ATATAGGGCAATGGGATTCCC 1517
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 1292 AAGCTGTACCCAAATGTTGATTTCTACTCTGGATTAATCA-ATAGGGCAATGGGAATCCC 1350
Query 1518 ACCAGAATTCTTCACAGTCCTATTCGCAGTCCCGCGTATGGCTGGATACTTGTCGCACTG 1577
| || |||| | |||| || | | | | ||| |||||||||||||| |||||
Sbjct 1351 ATCATCATTCACCGCAGT---AT-C--A--C--G--TATCGCTGGATACTTGTCACACTG 1398
Query 1578 GCGTGAGTCGTTAGATGATCCTGACACTAGGATCATGAGACCCCAACAGGCCTATACTGG 1637
||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1399 GCGTGAGTCTTTAGATGATCCTGACACAAAGATCATGAGACCCCAACAGGTCTATACTGG 1458
Query 1638 AGTGTGGATGAGGCATTACGAGCCAGTGAGAGAACGAACGTTATCAAGTGATTCAGG-TA 1696
|| | |||| |||||||||||| ||||||||||| |||| | | ||||||| || |
Sbjct 1459 AGCGGGGATAAGGCATTACGAGACAGTGAGAGAAAGAACCA-AGCT-GTGATTC-GGATT 1515
Query 1697 CGGATAAGTTTGGTCAAGTTTCCATTTCGAATGCATCAAGAAGGCGTTTAGCTGGATCA 1755
|||| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1516 TGGATCAGTTGGGTCAAGTTTCCATTTCGAATGCATCAAGAAGGCGTT-AGCTGGGTCA 1573
> AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:17801471-17806049
REVERSE LENGTH=3249
Length=3249
Score = 1530 bits (828), Expect = 0.0
Identities = 1252/1456 (86%), Gaps = 31/1456 (2%)
Strand=Plus/Plus
Query 316 GCGATCGAGCCATGGTGCACATCGGCTCACATTACCGCT-GCACCGCATGGATCGCTT-A 373
|||||||||| ||||||||| ||||| | | | | | ||||||| |||||| || |
Sbjct 137 GCGATCGAGCGATGGTGCACGTCGGCGGATACGAGTG-TCGCACCGCTTGGATC-TTTGA 194
Query 374 AAGGAA-ATTTGACGATCGTCGATGAGCGTACGGGGAAGAAA-TATCAGGTCCCAGTCTC 431
| |||| | ||||||||||||| || || || |||| ||| ||| | || || |||||
Sbjct 195 AGGGAACA-CTGACGATCGTCGACGAACGCAC-CGGAAAAAATTATAAAGTTCCGGTCTC 252
Query 432 AGA-GCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGATAACGACGGGGAAAGATGACA 490
||| | ||||||||||||||||||||||| |||| |||||| ||||||||| || ||||
Sbjct 253 AGATG-ATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATAGTGACGGGGAAGGAAGACA 311
Query 491 AGGGGCTTAAGTTGTACGATCCAGGTTACTTGAACACGGCTCCGGTTCGATCTTCGATTT 550
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 312 AGGGGCTTAAGTTATACGATCCAGGTTACTTGAACACGGCTCCTGTTCGATCTTCGATTT 371
Query 551 GTTACATCGACGGAGATGAAGGAATCCTACGTTATCGGGGATACCCAATCGAAGAATTGG 610
||||||||| ||||||||||| ||||| ||||| || || |||||||| || ||| |||
Sbjct 372 CTTACATCGATGGAGATGAAGGGATCCTTCGTTACCGTGGCTACCCAATTGAGGAAATGG 431
Query 611 CTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCATGTATGGAAATCTGCCTTCTC 670
|||||| |||||||||| | ||||| |||||||| ||||||||||| |||||||| |||
Sbjct 432 CTGAGAACAGTACTTTTCTGGAGGTGGCTTATCTTCTCATGTATGGGAATCTGCCCTCTG 491
Query 671 AAAGTCAGCTAGCTGATTGGGAGTTTACGGTTTCTCAGCATTCAGCTGTGCCACAAGGAG 730
||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 492 AAAGTCAGCTATCTGATTGGGAGTTTGCAGTTTCTCAGCATTCAGCTGTGCCACAAGGTG 551
Query 731 TATTGGATATCATACAGTCCATGCCTCATGATGCACACCCAATGGGAGTTCTTGTGAGTG 790
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TATTAGATATTATACAGTCTATGCCTCATGATGCACACCCAATGGGAGTTCTTGTGAGTG 611
Query 791 CCATGAGTGCACTTTCTATCTTTCATCCTGATGCAAATCCTGCTCTTAGTGGCCAAGATA 850
| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 612 CAATGAGTGCGCTTTCCATCTTTCATCCTGATGCTAATCCTGCTCTTAGGGGCCAGGATA 671
Query 851 TTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCGTATTCTCGGAAAGGCACCAA 910
||||| | |||||||||||| | |||||||| ||| | || ||| | |||||||||||||
Sbjct 672 TTTACGATTCAAAACAAGTTAGAGATAAACAAATTATCCGCATTATTGGAAAGGCACCAA 731
Query 911 CAATTGCAGCGGCTGCTTATTTGAGGACGGCAGGCAGGCCTCCTGTTCTTCCTTCGGGCA 970
|||||||||| ||||||||| |||||| |||||| |||||||||||||||||||| || |
Sbjct 732 CAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGAAGGCCTCCTGTTCTTCCTTCAGGAA 791
Query 971 ACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTCAATGGGAAATAGGTCTTACA 1030
||||| ||||| |||| ||||||||||||||||| ||||| |||||||||| || ||||
Sbjct 792 ACCTTCCTTATGCAGATAATTTCCTCTATATGCTTGATTCCCTGGGAAATAGATCCTACA 851
Query 1031 AGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTTCATACTGCATGCTGAACATG 1090
| ||||||||||| ||||||| ||| ||||||||||||||||||||||||| || ||||
Sbjct 852 AACCTAATCCTCGGCTGGCTCGGGTGTTGGACATCCTCTTCATACTGCATGCAGAGCATG 911
Query 1091 AGATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTCTAGTGGTGTTGATGTGTACA 1150
| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 912 AAATGAACTGCTCCACCGCTGCTGCTCGGCATCTTGCCTCTAGCGGTGTTGATGTCTACA 971
Query 1151 CTGCTTGT-GCTGGAGCTGTTGGAGCGCTTTATGGTCCACTTCATGGTGGCGCGAACGAG 1209
||||| || ||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 972 CTGCT-GTTGCTGGAGCTGTGGGAGCGCTTTATGGTCCACTTCATGGTGGTGCAAACGAG 1030
Query 1210 GCTGTGCTTAAGATGTTAG-CAGAGATTGGGACAGCTGAAAATATTCCAGATTTCATTGA 1268
||||||||||||||||| | ||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1031 GCTGTGCTTAAGATGTT-GTCAGAGATTGGGACTGTTGAAAATATTCCAGAGTTCATTGA 1089
Query 1269 AGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGGACATCGTGTTTACAAAAACTA 1328
|| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1090 GGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTA 1149
Query 1329 TGACCCCCGAGCAAAAGTCATaaaaaaaCTGGCAGATGAAGTGTTCTCCATTGTTGGTAG 1388
|||||| ||||| |||||||| || || ||||| |||||||| || ||||||||||| |
Sbjct 1150 TGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGAAGTATTTTCCATTGTTGGAAA 1209
Query 1389 GGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGCACTGTCTGATGAATATTT 1448
||||||||| || ||||| || ||||| || |||||||| || || ||||| || || ||
Sbjct 1210 GGATCCTCTAATTGAGGTTGCTGTTGCACTTGAGAAGGCAGCTCTCTCTGACGATTACTT 1269
Query 1449 TGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTCTGGATTAATATATAGGGCAAT 1508
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1270 TGTTAAGAGAAAGCTGTATCCAAATGTTGACTTCTACTCTGGATTAATATACAGGGCAAT 1329
Query 1509 GGGATTCCCACCAGAATTCTTCACAGTCCTATTCGC-AGTCC-CGCGTATGGCTGGATAC 1566
|||||| ||||| || |||||||| ||| ||||||| | ||| ||| ||||||||||||
Sbjct 1330 GGGATTTCCACCGGAGTTCTTCACGGTCTTATTCGCGATTCCTCGC--ATGGCTGGATAC 1387
Query 1567 TTGTCGCACTGGCGTGAGTCGTTAGATGATCCTGACACTAGGATCATGAGACCCCAACAG 1626
||||| || ||| ||||| | |||||||||||||| | |||||||||||| ||||||
Sbjct 1388 TTGTCACATTGGAAAGAGTCACTGGATGATCCTGACACCAAGATCATGAGACCACAACAG 1447
Query 1627 GCCTATACTGGAGTGTGGATGAGGCATTACG-AGCCAGTGAGAGA-ACGAAC-GTTATCA 1683
| || || || |||||| ||||||||||| | ||||||||||| | ||| || | |
Sbjct 1448 GTGTACACAGGCGTGTGGCTGAGGCATTACACA-CCAGTGAGAGAGA-GAATAGTGA-CG 1504
Query 1684 -AGTGATTC-A--G-GTACGGATAAGTTTGGTCAAGTTTCCATTTCGAATGCATCAAGAA 1738
| ||| || | | || | || || || |||||||| | | ||| |||||||||||||
Sbjct 1505 GA-TGACTCGAAAGAGT-CAGACAAATTGGGTCAAGTCGCGACTTCAAATGCATCAAGAA 1562
Query 1739 GGCGTTTAGCTGGATC 1754
| ||||| ||||||||
Sbjct 1563 GACGTTTGGCTGGATC 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97690260570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5