BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486341
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58830.1 | Symbols: | haloacid dehalogenase (HAD) superfami... 1762 0.0
> AT3G58830.1 | Symbols: | haloacid dehalogenase (HAD) superfamily
protein | chr3:21755053-21756641 REVERSE LENGTH=1155
Length=1155
Score = 1762 bits (954), Expect = 0.0
Identities = 1093/1157 (94%), Gaps = 22/1157 (2%)
Strand=Plus/Plus
Query 1 ATCGATGGCTGCCTCCACTAGTTTCTACTACCCAATCCCCAAAAGTTTCCTTCTTTCTCC 60
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATCGATGGCTGCCTCCACTACTTCCTACTACCCAATCCCCAAAAGCTTCCTTCTTTCTCC 60
Query 61 TCCCCGTCACAAACGAAACCCTAATCTCATCTCCTGCTCCACCAAACCCATTTGCTCTCC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCTCGTCACAAACGAAACCCTAATCTCATCTCCTGCTCCACCAAACCCATTTGCTCTCC 120
Query 121 T-C-CC-CCTTCG---------TC-T-T-CTCTGCAAACGACAACAACCCATCGAGGCCA 165
| | || |||||| || | | ||||||||||||| |||||||||||| ||||
Sbjct 121 TCCTCCTCCTTCGTCTTCTTCTTCGTCTCCTCTGCAAACGACGACAACCCATCGAAGCCA 180
Query 166 AAAGCAGAATCTGCGTTTACCCACGTTTGAAGATTCGTTTCTTCTTTACCAATTCAGCTC 225
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 AAAGCAGAATCTGCGTCTACCCACGTTTGAAGATTCGTTTCTTCTTTACCAATTTAGCTC 240
Query 226 TCCCACCGAAGACCCAGGATTTTCTAACCGGATCCCTGAACAATTCGACGGAGAGCCACG 285
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 241 TCCCACCGAAGACCCAGGATTCTCTAACCGGATCCCGGAACAATTCGACGGAGAGCCACG 300
Query 286 CGAATTGGTGTTGCCGAGAGTAGAAGACAACAACAAGGGGTTGGCGATTTCGTCGAACAT 345
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 301 CGAATTGGTGTTGCCGAGAGTAGAAGACAACAACAAAGGGTTGGCAATTTCGTCGAACAT 360
Query 346 GTGGTGGGCAGATCTGAAAGCGGCTCTTGGGCAACGAATCAATATTGAGGGTATCGTTTC 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGTGGGCAGATCTGAAAGCGGCTCTTGGGCAACGAATCAATATTGAGGGTATCGTTTC 420
Query 406 TTCGGTCTCTGTTGTTGTTAAAGATCGTCAATTGGTTCTTCCGCATGTTTCTGTGAAAGA 465
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TTCGGTCTCCGTTGTTGTTAAAGATCGTCAATTTGTTCTTCCGCATGTTTCTGTGAAAGA 480
Query 466 TTTAAGGTACATTGATTGGGGAGAGCTGAAGAGAAAGGGATTCAAAGGTGTAGTGTTTGA 525
|||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 481 TTTAAGATACATTGATTGGGAAGTGCTGAAGAGAAAGGGCTTCAAAGGTGTAGTGTTTGA 540
Query 526 TAAGGATAATACTCTTACGGCTCCTTATTCTCTAGCGATTTGGCCACCACTCCGGCCTTC 585
||| ||||| ||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 541 TAAAGATAACACTCTTACGGCTCCTTATTCTCTAGCGATTTGGCCACCATTACGTCCTTC 600
Query 586 TATTGAGCGGTGTAAAGCCGTGTTTGGCCATGACATCGCCGTGTTTAGCAATTCCGCTGG 645
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTGAGCGGTGTAAAGCCGTTTTTGGCCATGACATCGCCGTGTTTAGCAATTCCGCTGG 660
Query 646 GCTTACGGAATATGATCATGATGATTCGAAAGCTAAAGCATTGGAGGCTGAGATAGGAAT 705
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 GCTCACGGAATACGATCATGATGATTCGAAAGCTAAAGCATTGGAGGCTGAAATAGGAAT 720
Query 706 TAGAGTGTTGAGGCATAGAGTGAAGAAGCCTGCGGGAACTGCTGAAGAAGTCGAGAAACA 765
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 721 TAGAGTGTTGAGGCATAGAGTGAAGAAGCCTGCAGGAACTGCTGAAGAAGTTGAGAAACA 780
Query 766 CTTTGGTTGCACATCTTCGGAGCTAATCATGGTGGGTGATCGACCTTTCACAGATATCGT 825
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTTGGTTGCACATCTTCAGAGCTAATCATGGTGGGTGATCGACCTTTCACAGATATCGT 840
Query 826 TTACGGGAACAGAAACGGATTTCTAACAGTATTAACCGAGCCGTTGAGTCGAGCTGAGGA 885
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 841 TTACGGGAACAGAAACGGATTTCTAACCGTATTAACCGAGCCTTTGAGTCGAGCTGAGGA 900
Query 886 GCCTTTCATTGTTAGACAGGTGAGGAGATTAGAGTTGGCCTTGTTGAAACGTTGGTTGAG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCCTTTCATTGTTAGACAGGTGAGGAGATTAGAGTTGGCCTTGTTGAAACGTTGGTTGAG 960
Query 946 AAAAGGTTTGAAGCCTGTGGATCATAGTTTGGTATCAGATGTAACACAGTTTGTTAAAGA 1005
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 AAAAGGTTTGAAGCCTGTGGATCATAGTTTGGTATCAGATATAACACAGTTTGTTAAAGT 1020
Query 1006 TCCATCAGATTTGTAAGAAGGATTCTCAGTTTGCTA----AATCAACAACTTTGTTCCTT 1061
|||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1021 TCCATCAGATTTGTAAGAAGGATTCTCATTTTGCTATTGCAA-CAACAACTTTGTTCCTT 1079
Query 1062 GttttttttttGTATAATGGAAATTTTGACTTTGGGTTTTGGCCAAGTGCATCAAGATGA 1121
|||||||||||||| | || ||||||||| |||||||||||||||| ||||||| ||| |
Sbjct 1080 GTTTTTTTTTTGTA-ATTG-AAATTTTGAGTTTGGGTTTTGGCCAAATGCATCATGATAA 1137
Query 1122 GAAATGCCATTTTTGAT 1138
||||||||||||||||
Sbjct 1138 AAAATGCCATTTTTGAT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5