BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486343 Length=997 Score E Sequences producing significant alignments: (Bits) Value AT3G58840.1 | Symbols: | Tropomyosin-related | chr3:21757312-2... 1495 0.0 > AT3G58840.1 | Symbols: | Tropomyosin-related | chr3:21757312-21758772 REVERSE LENGTH=1246 Length=1246 Score = 1495 bits (809), Expect = 0.0 Identities = 940/1003 (94%), Gaps = 9/1003 (1%) Strand=Plus/Plus Query 1 GATTAGCCGATCCCTCCACCGGAAAATC---AGAAGCAGCGTAAATGGCGGATGTTGAAG 57 |||||||||||||||||||||||||||| || || ||||||||||||||||||||||| Sbjct 59 GATTAGCCGATCCCTCCACCGGAAAATCGGAAGTAGAAGCGTAAATGGCGGATGTTGAAG 118 Query 58 ATCGTGCCGCAAAGGGGATCTCTGACTACGATCAATCCAGTGGAAAGACGACGGAACTGG 117 ||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 119 ATCGTGCGGCGAAGGGGATCTCTGACTACGATCAAGGTGGTGTAAAGACGACGGAACTGG 178 Query 118 AAAGGAAGATTGATGAAATGGAGAACAAGAATCAGGAGCTTACTAAAGAGAATCGAGAGT 177 ||||||||||||| || ||||||||||||||||||||||| || | ||||||||| || | Sbjct 179 AAAGGAAGATTGAGGATATGGAGAACAAGAATCAGGAGCTCACGAGAGAGAATCGTGAAT 238 Query 178 TGAAGGAGAGGTTAGAGAGGCTTACGGGAGAAATTGAAGAGATGAAAGGTGTAGAAGCGG 237 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 239 TGAAGGAGAGGTTAGAGAGGCTTACGGGAGAAATTGAAGAGATGAAAGACGTAGAAGCGG 298 Query 238 AGATGAATCAGAGATTCGGAGAAATGGAGGAAGAGATCGAGGATTACGAGGAAGAGAAGA 297 |||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct 299 AGATGAATCAGAGATTCGGAGAGATGGAGAAAGAGATCGAGGAGTACGAGGAAGAGAAGA 358 Query 298 AGGCTTTGGAATCTATTTCTACGAGAGCTGTGGAGCTTGAAACTGAGGTGTCGAATCTTC 357 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 359 AGGCTTTGGAAGCTATTTCTACTAGAGCTGTGGAGCTTGAAACTGAGGTGTCGAATCTTC 418 Query 358 AGGACGATCTGATCACTTCTTTGAACGGCGTGGATAAGACGGCGGAAGAAGTCGCGGAGC 417 | ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct 419 ATGACGATCTGATCACTTCCTTGAACGGAGTGGATAAGACGGCGGAAGAAGTGGCGGAGC 478 Query 418 TTAAGAAAGCCTTGGCGGAGAAAGGGGAGAAGCTGGAGGGGTATGAGAAGGAAGCTGAGG 477 | |||||||| |||||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 479 TGAAGAAAGCGTTGGCGGAGATAGTGGAGAAGCTGGAGGGGTGTGAGAAGGAAGCTGAGG 538 Query 478 GTTTAAGGAAAGATAGAGCTGAGGTTGAGAAGAGGGTTAGGGATTTGGAAAGGAAGATTG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GTTTAAGGAAAGATAGAGCTGAGGTTGAGAAGAGGGTTAGGGATTTGGAAAGGAAGATTG 598 Query 538 GGGTTTTGGAAGTGAGGGAAATGGAGGAGAAGAGTAAGAAACTTAGATCAGAAGAGGAGA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 599 GGGTTTTGGAAGTGAGGGAAATGGAGGAGAAGAGTAAGAAACTTAGATCAGAAGAGGAAA 658 Query 598 TGAGGGA-ACTAGCGGATGAGAAAAAGAGAGAGATTGACGAATTGCAGAAGACAGTCGGT 656 ||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||| | Sbjct 659 TGAGGGAGA-TAGATGATGAGAAAAAGAGAGAGATTGAGGAATTGCAGAAGACAGTCATT 717 Query 657 GCTTTGAATCTGGAATTGGTGAAGAATGTAGAGGAATTGGCGAAATGGAAGTCTGAGAAG 716 | |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct 718 GTTTTGAATCTGGAATTGGTGAAGAATGTAGAAGAATTGAAGAAATGGAAGTCTAAGAAG 777 Query 717 AAGCTGACGGAGGAAGCTTTGAGTGAAACTCAAAAGA-GAGAGAAGGAGATGGAGTTAGA 775 ||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||| || Sbjct 778 AAGCTCACGGAGGAAGCTTTGAGTGAAACTCAAAA-ACGAGAGAAGGAGCTGGAGTT-GA 835 Query 776 -GAAGGACGAGTTGCTGAAGAAGGTTGAGGAAGGTAACAAGACGGTTTTTGGGTTGAATG 834 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 836 AGAAGGACGAGTTACTGAAGAAGGTTGAGGAAGGTAACAAGACGGTTTTTGCTTTGAATG 895 Query 835 AGAGAACTATGAAGCCTAGTAATGGAGTCAGAGACACAAATGGTGGTGACCAAAAGGGTT 894 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 AGAGAACCATGAAGCCTAGTAATGGAGTCAGAGACACAAATGGTGGTGACCAAAAGGGTT 955 Query 895 CCTTGGAAGCAGAGTTTCAGTGGCCCTTGGTTGCTGCTGGATCAGTTGGAGCTGCTGGTT 954 |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 956 CCTTGGAAGCTGAGTATCAGTGGCCAGTGGTTGCTGCTGGATCAGTTGGAGCTGCTGGTT 1015 Query 955 TGGTTGCAGCGACCTTGTTCGTCTGCTATTCTAAGCTAAGGTG 997 |||||||||||||||| |||||||||||||||||||||||||| Sbjct 1016 TGGTTGCAGCGACCTTTTTCGTCTGCTATTCTAAGCTAAGGTG 1058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48827590884 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5