BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486377 Length=1585 Score E Sequences producing significant alignments: (Bits) Value AT3G59090.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 1868 0.0 > AT3G59090.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:21839197-21842727 FORWARD LENGTH=1537 Length=1537 Score = 1868 bits (1011), Expect = 0.0 Identities = 1155/1220 (95%), Gaps = 28/1220 (2%) Strand=Plus/Plus Query 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60 Query 61 T-C-CTCTCTCTTACAAACCTAAAATCTCGGCATTCGATCTC-T---G-GG---GA-AAG 109 | | |||||||||||||||||||||||| ||||||||||||| | | || || ||| Sbjct 61 TCCTCTCTCTCTTACAAACCTAAAATCTAGGCATTCGATCTCTTGGGGAGGATCGAGAAG 120 Query 110 ---AGA--GGATTCACGATGACGATCTTATTAGCGACGCTTTTCGAATCAACCAAGGATA 164 ||| ||||||||||||| |||| |||||||| |||||||||||||||||||||| Sbjct 121 AAAAGAGCGGATTCACGATGAAGATC---TTAGCGACTCTTTTCGAATCAACCAAGGATA 177 Query 165 AATGCTATGCCCCAAGCTTCATCGCCGTCAATCTCTCTCTGGCTTTTATCGATGCCGCTC 224 |||||||||| || |||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 178 AATGCTATGCTCCTAGCTTCATCGCCGTCAATCTCTGTTTGGCTTTTATCGATGCCGCTC 237 Query 225 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 297 Query 285 GGACTCGGCAAAAAGTACTTCATCTTATGATTGGTTCTTCAAACACTGGTTCTGTCGTTT 344 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 298 GGACTCGGCAAAAAGTACTTCATCTTATGATTGCTTCTTCAAACACTGGTTCTGTTATTT 357 Query 345 ATTTTGTTGCTGCGATTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 404 |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ATTTCGTGGCTGCGGTTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 417 Query 405 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 477 Query 465 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGgatgatgatgatgatgaAG 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGGATGATGATGATGATGAAG 537 Query 525 AAAATAGCATCCAACAAGTTTTGCTTGAAAAAAGCAACACCAAGCCAGGTTCTTCAAATG 584 ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||| Sbjct 538 AAAATAGCATCCAACAAGTGTTGCTTGAAAAAAGCAAGAGCAAGCCAGGTTCTTCGAATG 597 Query 585 CTAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGGATTCATGTTGGAACCCGTCAGAAGT 644 | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 598 CAAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGTATTCATGTTGGAACCCGGCAGAAGT 657 Query 645 TTGTTGTTGCGGTAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 704 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTGTTGTTGCGGCAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 717 Query 705 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 777 Query 765 TTTTTGCTGCAATAATCCTAATCACGGGAGGAGGAATATGCTTCTATGGCCTGCGTCTGC 824 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 778 TTTTTGCTGCAATAATCCTAATCACTGGAGGAGGAATCTGCTTCTATGGCCTGCGTCTGC 837 Query 825 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCAGCAGAGATGCGTAAGGTATCTG 884 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | Sbjct 838 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCATCAGAGATGCGAAAGGTATCGG 897 Query 885 GTTTAGCAGGCGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 944 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GTCTAGCAGGAGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 957 Query 945 ACATTCCACTCTTCTATCATTGGAACCCAAGCAAATTACACGGCGTCAAAGCATTGGTTC 1004 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 958 ACATTCCACTCTTTTATCATTGGAACCCAAGCAAATTACACGGCATCAAAGCATTGGTTC 1017 Query 1005 TTCTGATCATATACTATTTCATAGGTTCCACTGTACCATTGGCTTTCGTTTTATGGGTTT 1064 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1018 TTCTGATCATATACTATTTCATAGGTTCCACCGTCCCATTGGCTTTCGTTTTATGGGTTT 1077 Query 1065 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGACAAGAAGACACCAGAAGGATTACTT 1124 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1078 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGGCAAGAAGACACCAGAAGGATTACTT 1137 Query 1125 ATGTCAACTATGAAACTGTTGCAAGGCAACCTC-----C---A-CAGGACTGGGCCTCCA 1175 |||||||||||||||||||| |||||||||||| | | || |||||||||||| Sbjct 1138 ATGTCAACTATGAAACTGTTCCAAGGCAACCTCAAGGTCCTCAACAAGACTGGGCCTCCG 1197 Query 1176 CTACAGTGTCGAAAAATCAG 1195 | |||||||||||||||||| Sbjct 1198 CCACAGTGTCGAAAAATCAG 1217 Score = 387 bits (209), Expect = 2e-106 Identities = 283/315 (90%), Gaps = 19/315 (6%) Strand=Plus/Plus Query 1277 AGTTACCGGGAAAAAGCCTCGTTGGATTGCGGAATGGTTGTTAGGCCCAATGTGGTGTGT 1336 |||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct 1216 AGTTACCGGGAAAAAGCCTCGTGGGATTGCAGAATGGTTCTTAGGCCCAATGTGGTGTGT 1275 Query 1337 TGTGCTGGAGTGAATGAAAGTGGTAACAAGCTCTCGTTTTCTTCTCTCT-ATGTCGCCTT 1395 |||| |||||||||||||||||| |||||| ||||||||||||||||| | |||||||| Sbjct 1276 TGTGGTGGAGTGAATGAAAGTGGAAACAAG--CTCGTTTTCTTCTCTCTGA-GTCGCCTT 1332 Query 1396 GGAAGACAAAAAATTTGTTTATAAGATAGAAAGGGAGGTTTGAATCTAAGAAAGC--TCT 1453 |||| || |||||||||||||||||||||||| |||||||||||||| ||||||| ||| Sbjct 1333 GGAATAC-AAAAATTTGTTTATAAGATAGAAATGGAGGTTTGAATCTGAGAAAGCTGTCT 1391 Query 1454 GTAAATATTAACTTTTGATTGCAGTTTTTAGTTTTAGGTGCATCATGTGTTGGA---ACT 1510 ||||||||||||||||||||||| ||| |||||| || ||||||||||||| ||| Sbjct 1392 GTAAATATTAACTTTTGATTGCAATTTATAGTTT-AG---CATCATGTGTTGGGGGGACT 1447 Query 1511 TGTGGATGGGATATAAAATGTGTTGTAAGGAAGAAGATATAAATTTTGTCTTCCTTTCTA 1570 ||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 1448 TGTGGATGG-ATATAAAATGTGTTCCAAGGAAGA---TATAA-TTTTGTCTTCCTTTCTA 1502 Query 1571 AACAGCGTCGTTTAA 1585 ||||||||||||||| Sbjct 1503 AACAGCGTCGTTTAA 1517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78262649655 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5