BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486390
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59220.1 | Symbols: PRN, PRN1, ATPIRIN1 | pirin | chr3:21894... 1487 0.0
AT3G59260.1 | Symbols: | pirin, putative | chr3:21903839-21905... 686 0.0
> AT3G59220.1 | Symbols: PRN, PRN1, ATPIRIN1 | pirin | chr3:21894134-21895623
FORWARD LENGTH=1057
Length=1057
Score = 1487 bits (805), Expect = 0.0
Identities = 919/975 (94%), Gaps = 4/975 (0%)
Strand=Plus/Plus
Query 19 AACAATAGCGTACCAAGACTTGTAATCAAGAAAGTTCTAGCAAAGCTTCAGAAGGAAGGT 78
|||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 84 AACAATAGTGTACCAAGAATTGTAATCAAGAAAGTTCTAGCAAAGCTTGAGAAGGAAGGT 143
Query 79 GAAGGCGCTGTCGTTAGAAACGGCATCACAGAGATTGACCAGAAGTTATTGGACCCGTTC 138
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 144 GAAGGAGCTGTCGTTAGAAATGGCATCACAAAGATTGACCAGAAGTTATTGGACCCGTTC 203
Query 139 GTGTTGCTAGTTGAATTTTCCCTTTCACTCTCAGCTGGATTCCCAGATCATCCTCACAGA 198
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 204 GTGTTGCTAGTTGAATTTTCCTTTTCACTCTCAGCTGGATTCCCAGATCATCCTCACAGA 263
Query 199 GGTTTTGAAAGTGTTACATACATGCTACAAGGAGGTATCATTCACAAAGATCCCAAAGGT 258
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 264 GGTTTTGAAAGTGTTACATACATGCTACAGGGAGGTATCATTCACAAAGATCCTAAAGGT 323
Query 259 CATAAAGGTACAATCCAAGCCGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATT 318
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CATAAAGGTACAATTCAAGCCGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATT 383
Query 319 CATTCTGAATTTCCGGAAGAAGAAGTCAACACTGGTTTACAGCTTTGGATCAATCTCCCT 378
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 384 CATTCCGAATTTCCGGAAGAAGAAGTAAACAATGGTTTACAGCTTTGGATCAATCTCCCT 443
Query 379 TCCACTGACAAAATGATTGAACCAAAATATAAAGAACTCTCAAGTTCAAACATCCCGCGA 438
|||||||| ||||||| ||||||||||||||| ||||| || |||| | |||| || |||
Sbjct 444 TCCACTGAAAAAATGACTGAACCAAAATATAAGGAACTATCGAGTTTAGACATTCCTCGA 503
Query 439 GCAGAAGAAAAAGGAGTAGAAGTCAAAGTCCTAGCCGGAGATTCAATGGGAATCAAATCT 498
||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 504 GCAGAAGAAAACGGAGTTGAGGTCAAAGTCATAGCCGGAGATTCAATGGGAATCAAATCT 563
Query 499 CCAGTCTACACAAGAACACCAACAATGTTCCTTGACTTTACCCTCAAGCCAGGATCTCAA 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CCAGTCTACACAAGAACACCAACAATGTTCCTTGACTTTACCCTCAAGCCAGGATCTCAA 623
Query 559 ACCCACCAGACCGTTCCAGAATCTTGGACCGCTTTTGCCTACATTATAGAAGGCGATGAG 618
|||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 624 ACCCACCAAACCGTTCCAGAATCATGGACCGCTTTCGCTTACATTATAGAAGGCGATGAA 683
Query 619 GGTGTGTTCGGTTCGTTGAACTCTTCCGCTATATCCGCGCATCATGTTGTTGTGTTTGGA 678
||||| |||||||| |||||||||||||| ||||| || || |||||||||||||||||
Sbjct 684 GGTGTTTTCGGTTCCTTGAACTCTTCCGCAATATCGGCCCACCATGTTGTTGTGTTTGGG 743
Query 679 CCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAACTTCGAGGTCGTTGAGGTTTCTGTTG 738
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 744 CCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAACTTCGAGGTCATTGAGGTTTTTGTTG 803
Query 739 ATTGCAGGGGAACCGATCGGTGAGCCTGTGGTTCAGTGTGGTCCGTTTGTGATGAATTCG 798
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 804 ATTGCAGGGGAACCTATCGGCGAGCCTGTGGTTCAGTGTGGTCCCTTTGTGATGAATTCA 863
Query 799 CAGGCGGAGATCGATATGGCTTTTGATGACTATCAGAATGCTAAGAACGGGTTTGAAATG 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 CAGGCGGAGATCGATATGGCTTTTGATGACTATCAGAATGCTAAGAACGGGTTTGAAATG 923
Query 859 GCCAAGTGTTAGAGGTCACAGTGAAAAGAGTTTGTAAACAAAAACCATATAGG-TTCTTT 917
|||||||||||||||| ||||||||||||||||||||||||||||||| | | || |||
Sbjct 924 GCCAAGTGTTAGAGGTTACAGTGAAAAGAGTTTGTAAACAAAAACCAT-TCTGATTATTT 982
Query 918 TGGGTTTTGTTTTCTTTATTTCACATTCAAGATGAGATCAATGTTAGGGGCTATAATAAC 977
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 983 TGGATTTTGTTGTCTTTATTCCACATTCAAGATGAGATCAATGTTAGGGGCTATAATATC 1042
Query 978 AATCC-TCTCTTTCA 991
|| || |||||||||
Sbjct 1043 AA-CCATCTCTTTCA 1056
> AT3G59260.1 | Symbols: | pirin, putative | chr3:21903839-21905188
FORWARD LENGTH=816
Length=816
Score = 686 bits (371), Expect = 0.0
Identities = 680/827 (82%), Gaps = 30/827 (4%)
Strand=Plus/Plus
Query 73 GAAGGTGAAGGCGCTGTCGTTA-GAAACGGCATCA-C-AG--AGATTGACCA-GAAGTTA 126
|||||| | || ||||||||| | || ||||||| | || ||| |||||| | |||||
Sbjct 3 GAAGGTTATGGTACTGTCGTTAGGCAA-GGCATCACCAAGTAAGAGTGACCATG-AGTTA 60
Query 127 TTGGACCCGTTCGTGTTGCTAGTTGAATTTTCCCTTTCA-CTCTCAGCTGGATTCCCAGA 185
|||||||||||||| | |||||||||||||||| ||||| ||| | | ||||||| |||
Sbjct 61 TTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTC-CTGGTGGATTCAAAGA 119
Query 186 TCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGCTACAAGGAGGTATCATTCACAA 245
||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| |
Sbjct 120 TCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGTTCCAGGGAGGCATCATTCACCA 179
Query 246 AGATC-CCAAAGGTCATAAAGGTACAATCCAAGCCGGAGATGTTCAGTGGATGACAGCAG 304
||| | || ||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 180 AGA-CTGTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAG 238
Query 305 GAAGAGGAATCATTCATTCTGAATTTCCGGAAGAAGAAGTCAACACTGGTTTACAGCTTT 364
||||||||||||||||||| ||| | || |||||| ||||||||| || ||||||||||
Sbjct 239 GAAGAGGAATCATTCATTCGGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTT 298
Query 365 GGATCAATCTCCCTTCCACTGACAAAATGATTGAACC-AAAATATAAAGAACTCTCAAGT 423
||||||| |||||||| | || ||||||||| || || |||| ||| |||| |||| |||
Sbjct 299 GGATCAACCTCCCTTCTAGTGCCAAAATGATCGAGCCTAAAA-ATATAGAAATCTCGAGT 357
Query 424 TCAAACATCCCGCGAGCAGAAGAAAAAGGAGTAGAAGTCAAAGTCCTAGCCGGAGATTCA 483
||| | || || | ||||| || | |||||||| ||||||||| | || ||||| |||
Sbjct 358 TCAGAGATACCTAGCGCAGATGACTATGGAGTAGAGGTCAAAGTCATTGCTGGAGAGTCA 417
Query 484 ATGGGAATCAAATCTCCAGTCTACACAAGAACACCAA-CAATGTTCCTTGACTTTACCCT 542
|||||| |||||||||| ||||||||| |||||||| || ||||||| |||||||| ||
Sbjct 418 ATGGGAGTCAAATCTCCTTTCTACACAAAAACACCAATCA-TGTTCCTAGACTTTACGCT 476
Query 543 CAAGCCAGGATCTCAAACCCACCAGACCGTTCCAGAATCTTGGACCGCTTTTGCCTACAT 602
| | ||| | |||||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct 477 CGATCCAAAAGCTCAAACCCACCAGGCCGTTCCAGAGTCATGGACCGCCTTTGCCTACAT 536
Query 603 TATAGAAGGCGATGAGGGTGTGTTCGGTTCGTTGAACTCTTCCGCTA-TATCC-GCGCAT 660
| ||||||||||||| || || || | || | | |||||||| | | || | || |||
Sbjct 537 TGTAGAAGGCGATGAAGGCGTTTTTAGCTCCTCGGACTCTTCCAC-AGTA-CAAGCACAT 594
Query 661 CATGTTGTTGTGTTTGG-ACCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAA-CTTCGA 718
||||||| |||||||| || ||||||| ||||||||||||||||| ||||| || | |
Sbjct 595 AATGTTGTGGTGTTTGGGAC-AGGGGATGAAGTTAGCGTGTGGAACACGTCAAACT-CTA 652
Query 719 GGTCGTTGAGGTTTCT-GTTGATTGCAGGGGAACCGATCGGTGAGCCTGTGGTTCAGTGT 777
|| |||||||||| || ||||||||||||||||||||| || ||||||||||||||| |
Sbjct 653 GGCCGTTGAGGTT-CTTGTTGATTGCAGGGGAACCGATAGGCGAGCCTGTGGTTCAGCAT 711
Query 778 GGTCCGTTTGTGATGAATTCGCAGGCGGAGATCGATATGGCTTTTGATGACTATCAG-AA 836
|| || ||||||||||| || |||| ||||| || ||| | ||| ||||||| | ||
Sbjct 712 GGGCCATTTGTGATGAACTCACAGGATGAGATTGAAATGACAATTGGGGACTATC-GTAA 770
Query 837 TG-CTAAGAACGGGTTTGAAATGGCCAAGTGTTAGAGGTCACAGTGA 882
|| | | ||| || || |||||||||||| || ||||||| |||||
Sbjct 771 TGGC-ATGAATGGCTTCGAAATGGCCAAGCATTGGAGGTCAGAGTGA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5