BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486407
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59400.1 | Symbols: GUN4 | enzyme binding;tetrapyrrole bindi... 1515 0.0
> AT3G59400.1 | Symbols: GUN4 | enzyme binding;tetrapyrrole binding
| chr3:21948717-21949710 REVERSE LENGTH=994
Length=994
Score = 1515 bits (820), Expect = 0.0
Identities = 945/1002 (94%), Gaps = 21/1002 (2%)
Strand=Plus/Plus
Query 1 GACGTGACTCTTCTCTCTCTTCTTCCTCCATCAATGGCGaccacaaactctctccaccac 60
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 GACGTGACTCTTCTCTCTCTTCCT-CTCCATCAATGGCGACCACAAACTCTCTCCACCAC 59
Query 61 caccaccact-c-ct-cttcttacacacaccaccgccacaatctccaTTCCCAATCTCAC 117
|||||||||| | || |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 60 CACCACCACTCCTCTCCTTCTTACACACACCACCGCAACAATCTCCATTGCCAATCTCAC 119
Query 118 TTCGGACCAACTTCTCTTTCCCTCAAACAACCCACTTCCGCCGCAACATTCTCACTTATC 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 TTCGGACCAACTTCTCTTTCCCTCAAACAACCCACTTCCGCCGCAACATTCTCACTAATC 179
Query 178 TGCTCTGCTTCTtcctcctcctcctcctcctcctccGCCGCTGTCTCCGCCGTTTCAACC 237
||||||||||| | ||| ||||||||||| || |||||| | ||| ||||||||||||
Sbjct 180 TGCTCTGCTTC-T--TCCACCTCCTCCTCCACCACCGCCG-TATCT--GCCGTTTCAACC 233
Query 238 ACAAACGCCTCCGCTACAACTGCCGAAACCGCGACAAAATTCGACGTTTTGGAGAACCAC 297
|||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 234 ACAAACGCCTCCGCCACAACTGCCGAAACCGCGACCATATTCGACGTTCTGGAGAACCAT 293
Query 298 CTCGTCAATCAAAACTTCCGACAAGCCGACGAGGAGACAAGGAGATTACTCATTCAGATA 357
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 294 CTCGTCAATCAAAACTTCAGACAAGCCGACGAGGAGACACGGAGATTACTCATTCAGATA 353
Query 358 GCCGGAGAAGCCGCCGTGAAACGTGGCTACGTTTTCTTCTCCGAGGTGAAAACAATCTCC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TCCGGAGAAGCCGCCGTGAAACGTGGCTACGTTTTCTTCTCCGAGGTGAAAACAATCTCC 413
Query 418 ACCGAAGATCTTCAAACCATCGACAATCTATGGACTAAACACAGCGATGGGAGATTCGGA 477
|||||||||||||| | |||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 414 CCCGAAGATCTTCAAGCTATCGACAATCTATGGATTAAACACAGTGATGGTAGATTCGGA 473
Query 478 TACAGCGTGCAACGCAAAATCTGGTTAAAAGTGAAGAAAGATTTCACAAGATTCTTCGTT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TACAGCGTGCAACGCAAAATCTGGTTAAAAGTGAAGAAAGATTTCACAAGATTCTTCGTT 533
Query 538 AAAGTTGAGTGGATGAAGCTTCTTGATACAGAGGTTGTTCAATACAATTACAGAGCGTTT 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 534 AAAGTTGAGTGGATGAAGCTTCTTGACACAGAGGTTGTTCAATACAATTACAGAGCGTTT 593
Query 598 CCTGACGAATTCAAGTGGGAGCTTAACAATGAAACGCCTTTAGGACACTTACCGCTCACA 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 594 CCTGACGAATTCAAGTGGGAGCTTAACGATGAAACGCCTTTAGGACACTTACCGCTCACA 653
Query 658 AACGCGTTGAGAGGAACGCAGCTTCTGAAATGCGTTTTAAGCCATCCTGCGTTTGCGACA 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AACGCCTTGAGAGGAACGCAGCTTCTGAAATGCGTTTTAAGCCATCCTGCGTTTGCGACA 713
Query 718 GCTGATGATAACAGTGGAGAAACAGAAGAAGAGCTAAACAGAGGTGTTGCTGTGGCTAAG 777
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 714 GCTGATGATAACAGTGGAGAAACAGAAGACGAGCTTAACAGAGGTGTTGCGGTGGCTAAG 773
Query 778 GAACAGACAGGAGTAGGAGCAGACAAAAGAGTGTTTAAAACAAATTACAGCTTCTGACGT 837
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 GAACAGGCAGGAGTAGGAGCAGACAAAAGAGTGTTTAAAACAAATTACAGCTTCTGATGT 833
Query 838 CTTTCTCCtt-tttttattttatt---aat-tt--t---CTGATATTGTGAAAGTATAAA 887
|||||||||| ||||| |||| || ||| || | |||||||||||||||||||||
Sbjct 834 CTTTCTCCTTCTTTTTTTTTTTTTTTTAATATTGATTTTCTGATATTGTGAAAGTATAAA 893
Query 888 CAAATCTCTGTAATCATATCATTAATTAAATTGGGTTTCTCTTCAATGTCAGTTTCAATT 947
||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||
Sbjct 894 CAAATCTCTGTAATCATATCATTAATTAAATCGGATTTCTCTTCAATGTCAGTTCCA-TT 952
Query 948 GTGATTATGGATGTATGAACAAAGTCAGATCATTAGTTAATG 989
|||||||||||||||||||||||| |||||||||||||||||
Sbjct 953 GTGATTATGGATGTATGAACAAAGCCAGATCATTAGTTAATG 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48425717708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5