BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486458
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59940.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1916 0.0
> AT3G59940.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:22142900-22144439 FORWARD LENGTH=1540
Length=1540
Score = 1916 bits (1037), Expect = 0.0
Identities = 1200/1278 (94%), Gaps = 14/1278 (1%)
Strand=Plus/Plus
Query 1 GTAATAATTAATGGGAGTGTCAAAGAAGAAATCAGGTGAGATTAGGGGAGATTTAATCCC 60
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 100 GTAATAACTAATGGGAGTGTCAAAGAAGAAATCAGGTGAGATTAGAGGAGATTTAATCCC 159
Query 61 AGGATTACCAGAGGAATTAGCAATAGAGTGTTTGGTTAGAGTTCCTTTTCTGTTTCATTC 120
||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 160 AGGGTTACCAGAGGAATTAGCAATTGAGTGTTTGGTTAGAGTTCCTTTTCAGTTTCATTC 219
Query 121 TTCCATGAATTCTGTTTGCCGATCATGGAAATGCGTTATCTCCAGTCGTTCTTTTATCAA 180
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TTCCATCAAATCTGTTTGCCGATCATGGAAATGCGTTATCTCCAGTCGTTCTTTTATCAA 279
Query 181 GGAACGGATAAGTTTTGGTAAAGCTGAATCTCTACTCTGTCTTGTTCAACCTCTGACTTC 240
|||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 280 GGAACGGATAGGTTTTGGTAAAGCTGAATCTCTTCTCTGCCTTGTTCAACCTCTGACTTC 339
Query 241 ACCACCGTCTCCGGTGATGATTGACGGTGGTGAGATGAGTGAGAAGCAGAAGAAAGTGGA 300
|||||||||||||| |||||| || ||||||||||||||| || | ||||||||| |||
Sbjct 340 ACCACCGTCTCCGGCGATGATGGAAGGTGGTGAGATGAGTCAG-A--AGAAGAAAGAGGA 396
Query 301 AGAAGAAGGCGAGTCTCAGATGACGCAGCA---G------CCGCGTGTTACTGGAACGCC 351
|||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 397 AGAAGAAGGCGAGTCTCAGATGACGCAGCAGCTGCTACAACCGCGTATTACTGGAACGCC 456
Query 352 ACTTTACGGTTTGAGCGTTTATAACGCAACGCTGGACACGTGGCACCGAGTCGCGATTCC 411
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ACTTTACGGTTTAAGCGTTTATAACGCAACGCTGGACACGTGGCACCGAGTCGCGATTCC 516
Query 412 TGAACGGATTCCTTTGTTCTGCGAGTGCGTTGCGATTCAGGACGCTGGGAAAGTGTTGTT 471
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 517 TGAACGGATTCCTTTGTTCTGCGAATGCGTTGCGATTCAGGACGCGGGGAAAGTGTTGTT 576
Query 472 AATCGGCGGTTGGGATCCGGAGACGTTGCAGCCTGTGAGAGATGTGTTTGTTTTGGATTT 531
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 577 AATCGGCGGTTGGGATCCGGAGACGTTGCAGCCTGTGCGAGATGTTTTTGTTCTGGATTT 636
Query 532 CTTCGCCGGAGAAGGAAGCGGACGGAGGTGGAGAAGAGGGAAACCGATGTCGGCGGCGAG 591
|||||||||||||||||||||| | |||| |||||||| | |||||||||||||||||
Sbjct 637 CTTCGCCGGAGAAGGAAGCGGAAGAAGGTTCAGAAGAGGCAGGCCGATGTCGGCGGCGAG 696
Query 592 ATCGTTTTTTGCTTGCGCGTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGTCATGA 651
||||||||| || || || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 697 ATCGTTTTTCGCCTGTGCTTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGACATGA 756
Query 652 TGATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTGGAGAAAGATGAGTGGTC 711
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 757 TGATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTAGAGAAAGACGAGTGGTC 816
Query 712 GACGATTCCTCCGATGACGGAAGGTAGAGACGAGTGTCACGGATTCTCGATGGCGACGGA 771
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 817 GATGCTTCCTCCGATGACGGAAGGAAGAGACGAGTGTCACGGATTCTCGATGGCGACGGA 876
Query 772 TTTTGGATTTTGTGTGTTGAGCGGTTACGGAACGGAGACGCAGGGCCAATTCCGATCTGA 831
| |||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 877 TCCTGGATTTTGTGTTTTGAGCGGTTATGGAACGGAGACGCAAGGCCAATTCCGATCTGA 936
Query 832 CGGCGAGATTTACGATCCGATTACGAATTCATGGTCGACAATCGAAAATGTATGGCCGTT 891
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 937 CGGCGAGATTTACGATCCGATTACGAATTCATGGTCGACAATCGAGAATGTCTGGCCGTT 996
Query 892 TCCTGATTTAAGTCCGAGAGGTCGCACCGCCGCGGCTGCTGCTGAA-TCCGCCGGAGATT 950
||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 997 TCCCGATTTGAGTCCGAGAGGTCGCACCGCCGCGGCTGCTGCTGAATTCC-CCGGAGATT 1055
Query 951 TTAGAGGTTGTCGGTTATGGTGTTTTATTGATAGCGAGAGACAGAGTCAGCCTCGTTGGG 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1056 TTAGAGGTTGTCGGTTATGGTGTTTTATTGATAGCGAGAGACAGAGTCAGCCTCATTGGG 1115
Query 1011 AAATTGAGGACGATTCGATGAAATGGAAGGTAGTTATGGAGACGATTCGGCTCCCGGTGA 1070
|| |||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1116 AAGTTGAAGACGATTCGATGAAATGGAAGGTAATTATGGATACGATTCGGCTTCCGGTGA 1175
Query 1071 CGACGATGACGTCGGTTTTCGCAGGAAGCTTGAGTGGCCAAGCGGTGGCAATGATTGGCG 1130
|||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1176 CGACGATGACTTCGGTTTTTGCTGGAAGTTTGAGTGGCCAAGCGGTGGCAATGATTGGCG 1235
Query 1131 GTGGCGGTGAAGAAAGTGGGACGATGATGATGAAGACGACGGCGGAAAATAATGGCGGGA 1190
|||| |||||||||||||| ||||||||| |||||||||||||||| || ||||||||||
Sbjct 1236 GTGGTGGTGAAGAAAGTGGAACGATGATGGTGAAGACGACGGCGGAGAAGAATGGCGGGA 1295
Query 1191 AGTGGAGCCACGTCAACACTCCCTCTGGTTTTTCGAGTCTTCCTTTCTCGTGTTCTTCAA 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 AGTGGAGCCACGTCAACACTCCCTCTGGTTTTTCGAGTCTTCCTTTCTCGTGTTCTTCAA 1355
Query 1251 TCTACGTTTGAAGATTCT 1268
|||||||||||||| |||
Sbjct 1356 TCTACGTTTGAAGAATCT 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5