BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486475 Length=1608 Score E Sequences producing significant alignments: (Bits) Value AT3G60100.1 | Symbols: CSY5 | citrate synthase 5 | chr3:2219273... 2525 0.0 AT2G44350.2 | Symbols: ATCS, CSY4 | Citrate synthase family pro... 1395 0.0 AT2G11270.1 | Symbols: | citrate synthase-related | chr2:44847... 171 3e-41 > AT3G60100.1 | Symbols: CSY5 | citrate synthase 5 | chr3:22192730-22196447 FORWARD LENGTH=1754 Length=1754 Score = 2525 bits (1367), Expect = 0.0 Identities = 1531/1610 (95%), Gaps = 12/1610 (1%) Strand=Plus/Plus Query 1 AAGAATGGTGGTTTTTCGTAGCTTATCAGCCATTTCAAGGCTTCGGTCTCGAGCAGTGCA 60 |||||||||| ||||||| ||| |||||||||||||||| || ||||||||||||||||| Sbjct 155 AAGAATGGTGTTTTTTCGCAGCGTATCAGCCATTTCAAGACTACGGTCTCGAGCAGTGCA 214 Query 61 ACAATCCTCACTTAGCAACTCCGTCAGATGGCTCCACTCTTCTGAATTGGACTTGAAGTC 120 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 215 ACAATCCTCACTTAGTAACTCCGTCAGATGGCTCCACTCTTCTGAATTGGACTTGAAGTC 274 Query 121 GCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAACTGAAATCAGAACA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 GCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAACTGAAATCAGAACA 334 Query 181 TGGAAAGGTCCCAGTGGGGAACATCACCGTTGATATGGTACTTGGTGGAATGAGAGGGAT 240 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 AGGAAAGGTTCCAGTGGGGAACATCACCGTTGATATGGTACTTGGTGGAATGAGAGGGAT 394 Query 241 GACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGAATACGCTTTAGAGG 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 395 GACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGAATACGGTTTAGAGG 454 Query 301 CATGTCGATTCCTGAATGCCA-AAAAGTATTACCTTCAGCTCAGTCTGGAGAAGAGCCCT 359 |||||||||||||||||| || |||| |||||||||||||| |||||||||||||||||| Sbjct 455 CATGTCGATTCCTGAATGTCAGAAAA-TATTACCTTCAGCTGAGTCTGGAGAAGAGCCCT 513 Query 360 TGCCTGAGGGTCTTCTGTGGCTTCTGTTAACTGGAAAGGTGCCAACTAAAGAGCAAGTTA 419 |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 514 TGCCTGAGAGTCTTCTGTGGCTTCTATTAACTGGAAAGGTGCCAACTAAAGAGCAAGCTA 573 Query 420 ATGCTTTGTCAAAAGAGTTGGCTCATCGTGCGGCTGTGCCAGCTATAGATGCCCTGCCTT 479 |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 574 ATGCTTTGTCAACAGAGTTGGCTCATCGTGCGGCTGTGCCAGCTATAGATGCTTTGCCTT 633 Query 480 CAACAGCTCATCCAATGACTCAATTTGCTAGTGGGGTTATGGCCCTTCAGGTTCAAAGTG 539 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 634 CAACAGCTCATCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGGTTCAAAGTG 693 Query 540 AGTTTCAGAAGGCATATGAGCAGGGTGATA-TTCATAAGTCAAAGTACTGGGAGCCAACC 598 ||||||| ||||| |||||||||||||||| ||| |||||||||||||||||| |||||| Sbjct 694 AGTTTCAAAAGGCGTATGAGCAGGGTGATATTTC-TAAGTCAAAGTACTGGGAACCAACC 752 Query 599 TTTGAGGATGCACTAAACTTGATTGCTCGTGTTCCTGTTCTAGCTTCATACGTTTATCGA 658 || || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 753 TTCGAAGATGCCCTAAACTTGATTGCTCGTGTTCCTGTTGTAGCTTCATACGTTTATCGG 812 Query 659 AGGATGTACAAGGATGGTAGCATCATTCCATTAGATGATTCTTTGGATTATGGTGCAAAT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 AGGATGTACAAGGATGGTAGCATCATTCCATTAGATGATTCTTTGGATTATGGTGCAAAT 872 Query 719 TTTTCACACATGCTGGGATATGATAGTCCTCAGATGAAAGAACTCATGAGGCTTTATGTC 778 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 873 TTTTCACACATGCTGGGATTTGATAGTCCTCAGATGAAAGAGCTCATGAGGCTTTATGTC 932 Query 779 ACTATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGG 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 933 ACTATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACGCTGGTCACCTGGTTGGG 992 Query 839 AGTGCACTTTCAGATCCATATCTTTCATTTGCAGCTGCTTTAAATGGTTTAGCTGGTCCA 898 |||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 993 AGTGCACTTTCAGATCCATATCTTTCATTTGCTGCTGCATTGAATGGTTTAGCTGGGCCA 1052 Query 899 CTCCATGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAATCAGTTGTCGAGGAATGT 958 |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||| Sbjct 1053 CTCCATGGTTTGGCTAATCAGGAAGTTTTGCTGTGGATCAAATTAGTTGTTGAGGAATGT 1112 Query 959 GGAGAAAATATTTCAAAGGAACAGCTAAAAGATTATGTCTGGAAAACGTTAAACAGTGGC 1018 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 GGAGAAAGTATATCAAAGGAACAGCTAAAAGATTATGTCTGGAAAACGTTAAACAGTGGC 1172 Query 1019 AAGGTTGTTCCAGGATATGGCCATGGTGTTTTACGTAAACCGGATCCAAGATATGTATGC 1078 |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| Sbjct 1173 AAGGTTGTTCCAGGATATGGCCATGGTGTTTTGCGTAAAACGGATCCAAGATATATATGC 1232 Query 1079 CAAAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAG 1138 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 CAAAGAGAGTTTGCCTTGAAGCATCTACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAA 1292 Query 1139 CTTTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCT 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1293 CTTTATGAAGTGGTGCCTCCTATTCTAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCT 1352 Query 1199 AACGTTGATGCTCATAGTGGAGTGCTGCTGAACTACTATGGTCTAACCGAAGCAAGATAC 1258 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1353 AACGTTGATGCTCATAGCGGAGTGCTTCTGAACTACTATGGTCTAACCGAAGCAAGATAC 1412 Query 1259 TACACAGTGCTTTTTGGAGTCTCAAGAAGTCTTGGCATCTGTTCGCAGCTGATATGGGAC 1318 ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1413 TACACGGTGCTTTTTGGCGTCTCAAGAAGTCTTGGAATCTGCTCGCAGCTGATATGGGAC 1472 Query 1319 AGGGCACTTGGACTGCCACTTGAGAGACCAAAGAGTGTAAACATGGACTGGCTCGATAAC 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1473 AGGGCACTTGGACTGCCACTTGAGAGACCAAAGAGTGTAAACATGGACTGGCTCGATAAC 1532 Query 1379 TTCATGCTCTTGAACCACTAAGTTAATCGCTCACTGTTGTTGGTCGAGGTTCTCTCTTTC 1438 |||| || |||||||| ||||||||||| || |||| |||||||| ||||||||||||| Sbjct 1533 TTCACGCGCTTGAACCGCTAAGTTAATCCCTGACTGATGTTGGTCAAGGTTCTCTCTTTT 1592 Query 1439 ATCAAACCAGCCTTCTCTTCCATTTGATTGGGTAGCTTTTGGCACTTTTAGAGAGAAAAA 1498 |||| ||||||||||||||||||||||||||||||||| | | | | | | ||||| Sbjct 1593 ATCACTTCAGCCTTCTCTTCCATTTGATTGGGTAGCTTTTAG-AGAT--A-A-A-AAAAA 1646 Query 1499 GAACGATTTTTCGTCTAAATTTTGTTTCTACAGAGTTTTCATTTTGGTACTTCTTCAAAA 1558 |||||||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1647 -AACGATTTTTCGTCGAAATTTTGTT-CTACAGAGTTTTCATTTTGGTTCTTCTGCAAAA 1704 Query 1559 ACAATAATGTCAAACAAGTGAAGAAACAGTCTTTCTTAGATTGAGACACC 1608 ||||||| ||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1705 ACAATAAAGTCAAACAAGTAAAGAAACAGTCTTTCTCAGATTGAGACACC 1754 > AT2G44350.2 | Symbols: ATCS, CSY4 | Citrate synthase family protein | chr2:18316278-18320789 FORWARD LENGTH=1822 Length=1822 Score = 1395 bits (755), Expect = 0.0 Identities = 1201/1410 (85%), Gaps = 56/1410 (4%) Strand=Plus/Plus Query 2 AGAATGGTGGTTTTT-CGTAGCTTATCAGCCATTT-CAAGGCTTCGGTCTCGAG--CAGT 57 |||||||| |||||| || ||| |||| ||| ||| | ||||| ||||||| | ||| Sbjct 130 AGAATGGT-GTTTTTCCGCAGCGTATCGGCC-TTTACTAGGCTGAGGTCTCGCGTCCAGG 187 Query 58 G-CAACAATCCTCACTTAGCAACTCCGTCAGATGG---C---T-C-CA-CTCTTCTGAAT 107 | |||||||| ||||| ||||| || ||||||||| | | | | |||| | || Sbjct 188 GCCAACAATCTTCACTCAGCAATTCTGTCAGATGGATTCAGATGCAGAGCTCTACCGACC 247 Query 108 TGGACTTGAAGTCGCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAAC 167 ||||| ||||||||||| |||||||| | ||||| ||||| ||||||||| ||||||||| Sbjct 248 TGGACCTGAAGTCGCAGCTGCAAGAGTTAATTCCGGAACAGCAGGACCGTCTGAAGAAAC 307 Query 168 TGAAATCAGAACATGGAAAGGTCCCAGTGGGGAACATCACCGTTGATATGG-TACTTGGT 226 |||| ||||||||||| ||||||| | |||| |||||||| |||||||||| || ||||| Sbjct 308 TGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGGTTA-TTGGT 366 Query 227 GGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGA 286 ||||||||||||||||||||||| || |||||||||||||||||||| | || ||||| Sbjct 367 GGAATGAGAGGGATGACTGGATTGCTTTGGGAAACCTCATTGCTTGACCCGGAAGAGGGT 426 Query 287 ATACGCTTTAGAGGCA-TGTCGATTCCTGAATGCCAAAAAGTATTACCTTCAGCTCAGTC 345 || |||||||| || | ||||||||||||| ||||| |||||||||||| | || ||||| Sbjct 427 ATTCGCTTTAG-GGGATTGTCGATTCCTGAGTGCCAGAAAGTATTACCTACTGCCCAGTC 485 Query 346 TGGAGAAGAGCCCTTGCCTGAGGGTCTTCTGTGGCTTCTGTTAACTGGAAAGGTGCC-AA 404 ||||| || || || || ||||||||| |||||||||| |||||||||||||| || | Sbjct 486 TGGAGCTGAACCATTACCGGAGGGTCTTTTGTGGCTTCTCTTAACTGGAAAGGTACCTAG 545 Query 405 CTAAAGAGCAAGTT-AATGCTTTGTCAAAAGAGTTGGCTCATCGTGCGGCTGTGCC---- 459 | |||||||||||| || || |||| ||||| ||||| | ||||| |||||||| Sbjct 546 C-AAAGAGCAAGTTGAA-GCACTGTCGAAAGACTTGGCGAACCGTGCTGCTGTGCCAGAT 603 Query 460 -A---G--C--T---ATAGATGCCCTGCCTTCAACAGCTCATCCAATGACTCAATTTGCT 508 | | | | || ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 604 TATGTGTACAATGCCATCGATGCTCTGCCTTCCACAGCTCATCCAATGACTCAATTTGCT 663 Query 509 AGTGGGGTTATGGCCCTTCAGGTTCAAAGTGAGTTTCAGAAGGCATATGAGCAGGGTGAT 568 || || ||||||||||| ||||| |||||||||||||| |||||||||||| | | || Sbjct 664 AGCGGTGTTATGGCCCTCCAGGTGCAAAGTGAGTTTCAAAAGGCATATGAG-AATG-GA- 720 Query 569 ATTCATAAGTCAAAGTACTGGGAGCCAACCTTTGAGGA-TGCACTAAACTTGATTGCTCG 627 |||||||||||||||| |||||||||||| | |||||| ||| || ||| |||||||||| Sbjct 721 ATTCATAAGTCAAAGTTCTGGGAGCCAACATATGAGGATTGC-CTCAACCTGATTGCTCG 779 Query 628 TGTTCCTGTTCTAGCTTCATACGTTTATCGAAGGATGTACAAGGATGGTAGCA-T-CATT 685 |||||||||| ||||| |||| ||||||||||||||||| ||| ||||| | | | |||| Sbjct 780 TGTTCCTGTTGTAGCTGCATATGTTTATCGAAGGATGTATAAGAATGGT-G-ATTCCATT 837 Query 686 CCATTAGATGATTCTTTGGATTATGGTGCAAATTTTTCACACATGCTGGGATATGATAG- 744 || | |||| | |||||||||||||||||||||||||| |||||| |||||| |||| | Sbjct 838 CCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCCCACATGTTGGGATTTGAT-GA 896 Query 745 TCCTCAGATGAAAGAACTCATGAGGCTTTATGTCACTATCCACAGTGATCATGAAGGTGG 804 | || ||||||| |||||||||||||| |||| ||||||||||||||||||||||| Sbjct 897 TGAAAAGGTGAAAGAGCTCATGAGGCTTTACATCACCATCCACAGTGATCATGAAGGTGG 956 Query 805 AAATGTTAGTGCTCACGCTGGTCACCTGGTTGGGAGTGCACTTTCAGATCCATATCTTTC 864 |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| || Sbjct 957 AAATGTTAGTGCTCACACTGGTCACCTGGTTGGTAGTGCACTTTCAGACCCATATCTGTC 1016 Query 865 ATTTGCAGCTGCTTTAAATGGTTTAGCTGGTCCACTCCATGGTTTGGCTAATCAGGAAGT 924 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1017 ATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTCCATGGTTTGGCTAATCAGGAAGT 1076 Query 925 TTTGCTTTGGATCAAATCAGTTGTCGAGGAATGTGGAGAAAATATTTCAAAGGAACAGCT 984 ||||||||||||||||||||| || ||||||||||||||| |||| ||||| |||||| | Sbjct 1077 TTTGCTTTGGATCAAATCAGTCGTAGAGGAATGTGGAGAAGATATATCAAAAGAACAGTT 1136 Query 985 AAAAGATTATGTCTGGAAAACGTTAAACAGTGGCAAGGTTGTTCCAGGATATGGCCATGG 1044 ||||| ||||| |||||||| |||||||||||||||||| |||| |||||||| || || Sbjct 1137 GAAAGAATATGTTTGGAAAACATTAAACAGTGGCAAGGTTATTCCGGGATATGGTCACGG 1196 Query 1045 TGTTTTACGTAA-ACCGGATCCAAGATATGTATGCCAAAGAGAGTTTGCCTTGAAGCATC 1103 |||| | || || || | ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1197 TGTTCTGCGCAATACTG-ATCCAAGATATGTATGCCAAAGAGAATTTGCCTTGAAGCATC 1255 Query 1104 TACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAGCTTTATGAAGTGGTGCCTCCTATTC 1163 ||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||| ||| Sbjct 1256 TACCTGACGACCCTCTTTTCCAGCTGGTGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTC 1315 Query 1164 TAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCTAACGTTGATGCTCATAGTGGAGTGC 1223 | || ||||| |||||||| |||||||||||||| || ||||||||||| ||||| || | Sbjct 1316 TCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGT-C 1374 Query 1224 T-GCTGAACTACTATGGTCTAACCGAAGCAAGATACTACACAGTGCTTTTTGGAGTCTCA 1282 | ||||||| |||||||||||||||||||||| |||||||| ||||| ||||| || ||| Sbjct 1375 TTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACTACACCGTGCTCTTTGGTGTTTCA 1434 Query 1283 AGAAGTCTTGGCATCTGTTCGCAGCTGATATGGGACAGGGCACTTGGACT-GCCACTTGA 1341 || |||||||||||||| || ||||| ||||||||| | || |||||||| || |||||| Sbjct 1435 AGGAGTCTTGGCATCTGCTCTCAGCTTATATGGGACCGAGCTCTTGGACTTGC-ACTTGA 1493 Query 1342 GAGACCAAAGAGTGTAAACATGGACTGGCT 1371 ||| ||||||||||| | |||||||||||| Sbjct 1494 GAGGCCAAAGAGTGTTACCATGGACTGGCT 1523 > AT2G11270.1 | Symbols: | citrate synthase-related | chr2:4484720-4485308 FORWARD LENGTH=252 Length=252 Score = 171 bits (92), Expect = 3e-41 Identities = 116/127 (91%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 149 CAGGACCGTTTGAAGAAACTGAAATCAGAACATGGAAAGGTCCCAGTGGGGAACATCACC 208 |||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 127 CAGGACCGTTCGAAGAAACTGAAATTAAAACATGGAAAGGTTCCAGTGGGGAACATCACC 186 Query 209 GTTGATATGGTACTTGGTGGAATGAGAGGGATGACTGGATTACTC--TGGGAAACCTCAT 266 ||||||||||||||||||||||||||||||||||| ||||||| | | | || |||||| Sbjct 187 GTTGATATGGTACTTGGTGGAATGAGAGGGATGACCGGATTACACAATCGTAA-CCTCAT 245 Query 267 TGCTTGA 273 ||||||| Sbjct 246 TGCTTGA 252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79417262190 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5