BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486536
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle a... 826 0.0
AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:1861... 490 1e-137
AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:... 457 1e-127
> AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle
associated protein | chr3:22400395-22402702 FORWARD LENGTH=1207
Length=1207
Score = 826 bits (447), Expect = 0.0
Identities = 515/545 (94%), Gaps = 16/545 (3%)
Strand=Plus/Plus
Query 122 GATGAGTAACAGCGAGCTTCTCACCGTGGAGCCTCTCGATCTTCAATTCCCTTTTGAATT 181
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 190 GATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTTCAATTCCCTTTTGAATT 249
Query 182 GAAGAAGCAGATCTCTTGCTCTCTGTATTTGACGAACAAGACCGACAATAATGTTGCCTT 241
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 250 GAAGAAGCAGATCTCTTGCTCTCTCTATTTGACGAACAAGACCGACAATAATGTTGCCTT 309
Query 242 TAAGGTTAAGACTACGAATCCGAAAAAGTATTGTGTTAGGCCTAACACTGGAGTTGTTCT 301
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 310 TAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTAATACTGGAGTTGTTC- 368
Query 302 TCCC-AGGTCTACTTGTGAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGCTCCTTCAG 360
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 369 TCCCGAGGTCTACTTGCGAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGCTCCTTCCG 428
Query 361 ATATGCAGTGCAAGGACAAGTTTCTGCTCCAAGGTGTGATAGCTAGTCCTGGTGTCACAG 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 429 ATATGCAGTGCAAGGACAAGTTTCTGCTTCAAGGTGTGATAGCTAGTCCTGGTGTCACAG 488
Query 421 CCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCTAGTTGAGGAAACTA 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 489 CCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCGAGTTGAGGAAACTA 548
Query 481 AACTGAGAGTTACTTATGTTGCTCCACCACGACCACCATCACCGGTTCACGAAGGATCTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AACTGAGAGTTACTTATGTTGCTCCACCACGACCACCATCACCGGTTCACGAAGGATCTG 608
Query 541 AAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGGACATGGTTCTGAGTTTTCTG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 609 AAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGGACATGGTTCTGAATTTTC-G 667
Query 601 TAATGCTCTGTTTCAGAGATTTAGCGTGGACAG---GGCTGAACCGCAAGAAAACACATC 657
| | | | ||||||||| |||||||| ||||| || ||||||||||||||
Sbjct 668 T--T--T--G----AGAGATTTATCGTGGACAACAAGGCTGGACATCAAGAAAACACATC 717
Query 658 TGAGG 662
|||||
Sbjct 718 TGAGG 722
Score = 675 bits (365), Expect = 0.0
Identities = 399/414 (96%), Gaps = 7/414 (2%)
Strand=Plus/Plus
Query 899 AGGCGAGGGCTCTGATCACCAAGCTAACCGAAGAAAAACAGTCTGCCATTCAACTGAACA 958
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGCGAGGGCACTCATTACCAAGCTAACCGAAGAAAAACAGTCTGCCATTCAACTGAACA 779
Query 959 ACAGACTTCAAAGAGAACTGGATCAGTTAAGGCGTGAAAGCAAGAAGAGCCAAAGTGGTG 1018
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 ACAGACTTCAAAGAGAACTGGATCAGTTAAGGCGTGAAAGCAAAAAGAGCCAAAGTGGTG 839
Query 1019 GTATCCCATTCATGTACGTTCTTCTGGTCGGACTCATTGGTCTAATTTTGGGATACATTA 1078
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 840 GTATCCCATTCATGTACGTTCTTTTGGTCGGACTCATCGGTCTAATTTTGGGATACATTA 899
Query 1079 TGAAGAGGACATAAACCACCCACC-TGAATTTAATCCCTCACCCGCCACGAAGGAAGAAA 1137
|||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||
Sbjct 900 TGAAGAGGACATAAACCACCCACCTTGAAATTAATCCCTCACCCGCCACGAA-G--GAAA 956
Query 1138 AACAAAATAGACTTTTAACTCTTTTCAGTCGGACAtttttttCTCTTCTGTATTTGTCAA 1197
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AA-AAAA-AGACTTTTAACTCTTTTCAGTCGGACATTTTTTTCTCTTCTGTATTTGTCAA 1014
Query 1198 TTTCGCCTTAAAAAGGTGTCCTAGAAGATTTGTGTTTCGTAACTCAGTTTGCTTTGTTTT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 TTTCGCCTTAAAAAGGTGTCCTAGAAGATTTGTGTTTCGTAACTCAGTTTGCTATGTTTT 1074
Query 1258 TT-CAACTTTTGTAATCCAAATGACTTTGCGTTGGTTCTTTCTCCACTAATTCT 1310
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TTTCAACTTTTGTAATCCAAATGACTTTGCGTTGGTTCTTTCTCCACTAATTCT 1128
Score = 115 bits (62), Expect = 1e-24
Identities = 73/78 (94%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 3 TCTCGATCGACGACTG--CTCTCTCTGAACCGGAGACGGCGTCACGGGACGAATCTAATC 60
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 20 TCTCGATCGACGACTGCTCTCTCTCTGAACCGGAGACGGTGTCACGGGACGAATCTAATC 79
Query 61 GCCGGGAAACTGTTGTTT 78
|||||||||| ||| |||
Sbjct 80 GCCGGGAAACCGTTTTTT 97
> AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:18610806-18613290
FORWARD LENGTH=1262
Length=1262
Score = 490 bits (265), Expect = 1e-137
Identities = 461/551 (84%), Gaps = 31/551 (6%)
Strand=Plus/Plus
Query 122 GATGAGTAACAGCGAGCTTCTCACCGTGGAGCCTCTCGATCTTCAATTCCCTTTTGAATT 181
||||||| | | ||||||||||||| | || ||| |||| ||||||||||||||||||||
Sbjct 223 GATGAGT-A-A-CGAGCTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATT 279
Query 182 GAAGAAGCAGATCTCTTGCTCTCTGTATTTGACG-AACAAGACCGACAATAATGTTGCCT 240
|||||||||||||||||| ||||| |||||| | ||||||||||| ||| |||| ||||
Sbjct 280 GAAGAAGCAGATCTCTTGTTCTCTCTATTTGG-GTAACAAGACCGATAATTATGTCGCCT 338
Query 241 TTAAGGTTAAGACTACGAATCCGAAA-AAGTATTGTGTTAGGCCTAACACTGGAGTTGTT 299
| ||||||||||| |||||||| ||| ||||| || ||||||||||| ||||| ||||||
Sbjct 339 TCAAGGTTAAGACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTT 397
Query 300 CTTCCCAGGTC-TACTTGTGAAGTTCTT-GTGACCATGCAAGCTCAAAAGGAAGCTCCTT 357
| |||||| || | ||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 398 CATCCCAGATCCT-CTTCTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCTG 455
Query 358 CAGATATGCAGTGCAAGGACAAGTTTCT-GCTCCAAGGTGT-GATAGCTAGTCCTGGTGT 415
| ||| ||||||| || || ||||| || ||| ||| |||| | | |||||||| || |
Sbjct 456 CTGATCTGCAGTGTAAAGATAAGTT-CTTGCTTCAATGTGTAG-TCGCTAGTCCCGGAGC 513
Query 416 CACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCTAGTTGAGGA 475
||| ||||||| ||||| | ||||||||||||||||||||| || |||| |||||| ||
Sbjct 514 CACCCCCAAGGATGTTACACATGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAAGA 573
Query 476 AACTAAACTGAGAGTTA-CTTATGTTGCTCCACCACGACCACCATCACCGGTTC-ACGAA 533
|||||| |||||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct 574 GACTAAATTGAGAGTTGTCT-ATGTTGCTCCACCACGACCACCATCACCGGTTCGA-GAA 631
Query 534 GGATCTGAAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGG-ACATGGTTCTGA 592
|||||||||||||| |||||||| |||||||||||||| |||||||| | ||| ||||||
Sbjct 632 GGATCTGAAGAGGGCTCTTCACCGAGGGCTTCTGTCTCTGATAATGGGA-ATGCTTCTGA 690
Query 593 GTTTT-CTGTAATGCTCTGTTTCAGAGATTTAGCGTGGACAGGGCTGAACCGCAAGAAAA 651
|||| ||| ||||| || |||||||||| ||||||| ||| | || || ||
Sbjct 691 -TTTTACTGC--TGCTC-----CA-AGATTTAGCGCAGACAGGGTTGATGCTCAGGATAA 741
Query 652 CACATCTGAGG 662
|||||||||
Sbjct 742 TTCATCTGAGG 752
> AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:10143646-10144511
FORWARD LENGTH=450
Length=450
Score = 457 bits (247), Expect = 1e-127
Identities = 373/433 (86%), Gaps = 11/433 (3%)
Strand=Plus/Plus
Query 123 ATGAGTAACAGCGAGCTTCTC-ACCGTGGAGCCTCTCG-ATCTTCAATTCCCTTTTGAAT 180
|||||||||| |||||||||| | | |||||| | | |||||||||||||||||||||
Sbjct 1 ATGAGTAACAACGAGCTTCTCGA-AATCGAGCCTAT-GTATCTTCAATTCCCTTTTGAAT 58
Query 181 TGAAGAAGCAGATCTCTTGCTCTCTGTATTTGACGAACAAGACCGACAATAATGTTGCCT 240
||||||||||||| ||||||||||| || |||||||||||||| |||||||| || ||||
Sbjct 59 TGAAGAAGCAGATGTCTTGCTCTCTTTACTTGACGAACAAGACAGACAATAACGTGGCCT 118
Query 241 TTAAGGTTAAGACTACGAATCCGAAAAAGTATTGTGTTAGGCCTAAC-ACTGGAGTTGTT 299
||||||||||||| || |||| ||| || ||||| ||||||||||| | |||| || ||
Sbjct 119 TTAAGGTTAAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTA-TGGACTTATT 177
Query 300 CTTCCCAGGTCTACTTGTGAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGCTCCTTCA 359
||||| | ||| |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 CTTCCAAAGTCGACTTGTAAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGTTCCTTCT 237
Query 360 GATATGCAGTGCAAGGACAAGTTTCTGCTCCAAGGTGTGA-TAGCTAGTCCTGGTGTCAC 418
||||||||| || || |||||| || | ||| |||| | | ||||||||||| |||||
Sbjct 238 GATATGCAGAGCTTTGAAAAGTTTATGATTCAAAGTGT-ACTGGCTAGTCCTGGAGTCAC 296
Query 419 AGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCTAGTTGAGGAAAC 478
|||||| |||||||||| |||||||||||||||||| | || ||| |||||||||| ||
Sbjct 297 AGCCAAAGAAGTTACTCGTGAGATGTTTAGCAAAGAATCAGGGCATGTAGTTGAGGAGAC 356
Query 479 TAAACTGAGAGTTACTTATGTT-GCTCCACCACGACCACCATCACCGGTTCACGAAGGAT 537
|||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||
Sbjct 357 TAAACTGAGAGTTACTTATGTTTGCTCCACCACGACCAACATCACTAGTTCACCAAGGA- 415
Query 538 CT-GAAGAGGGTT 549
|| ||||||||||
Sbjct 416 CTAGAAGAGGGTT 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5