BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486537 Length=2195 Score E Sequences producing significant alignments: (Bits) Value AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcr... 3217 0.0 AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family transcr... 573 2e-162 > AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcription factor | chr3:22410365-22412608 REVERSE LENGTH=2244 Length=2244 Score = 3217 bits (1742), Expect = 0.0 Identities = 1920/2005 (96%), Gaps = 15/2005 (1%) Strand=Plus/Plus Query 199 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 292 Query 259 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAACTCCATGGACGA 318 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 293 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAGCTCCATGGACGA 352 Query 319 GTAGACGAAGATCTCTGCTTTATTGTTAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 378 ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 353 GTAGAAGAAGATCTCTGCTTTGTTGTCAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 412 Query 379 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 472 Query 439 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 532 Query 499 AAATGCGAACAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 558 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 AAATGCGACCAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 592 Query 559 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGTGATGTAGTGGATCCGGGTTCTGAG 618 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 593 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGCGATGTAGTGGATCCGGGTTCGGAG 652 Query 619 TTTGTGGGTTTCGACACCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 678 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 TTTGTGGGTTTCGACATCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 712 Query 679 TTTGGCTATGGCTTCCCTTTTCACGACCCACCGGAAGAAGAGAAGTTTCAGATTTCAATA 738 ||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||| Sbjct 713 TTTGGATATGGCTTCCCTTTTCAAAACGCACCGGAAGAAGAAAAGTTTCAGATTTCAATA 772 Query 739 AACCCAAATCCGAGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAAAGGCTCAAT 798 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 773 AACCCAAATCCGGGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAACGGCTCAAT 832 Query 799 TCGGGTCAACCCGGATCTCAACACCACCACCAACAGTGGGGTTTCCCGTTCTCGGATCCG 858 ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| Sbjct 833 TCGGGTCAACCCGGATCTCAACACCTCCA------GTGGGTTTTCCCGTTCTCGGATCCG 886 Query 859 GGTCACGAATCTCACGACCCGTTTCTCACGCCGCCAAAGATAGCCGGAGAAGACCAAAAC 918 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 887 GGTCACGAATCTCACGACCCGTTTCTCACACCGCCAAAGATAGCCGGAGAAGACCAAAAC 946 Query 919 GACCAAGACCAGTCAACGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACA 978 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 GACCAAGACCAGTCAGCGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACC 1006 Query 979 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1066 Query 1039 AACCTTAACAACAAC---GAC-AC--TAACAACAATCCTAAACCTCCGTTTCGTAGAGCA 1092 ||||||||||||||| ||| || |||||||||||||||||||||||| | |||||| Sbjct 1067 AACCTTAACAACAACAACGACGACACTAACAACAATCCTAAACCTCCGTTCCACAGAGCA 1126 Query 1093 GCTTCGTATATAACCGAAGCTCTTCACTCTCTTCTTCAAGACTCATCATCATCACCACCG 1152 |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1127 GCTTCGTATATAACAGAAGCTCTTCACTCTCTCCTTCAAGACTCATCATTATCACCACCG 1186 Query 1153 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGAATCGCAGCTTACAGAGCTTTCTCGGAA 1212 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1187 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGGATCGCAGCTTACAGAGCTTTCTCAGAA 1246 Query 1213 ACGTCACCGTTTCTTCAATTCGTCAATTTCACAGCAAACCAGACGATTCTTGAGTCCTTC 1272 |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| Sbjct 1247 ACGTCACCGTTTCTTCAATTCGTCAACTTCACAGCAAACCAAACGATTCTCGAGTCATTC 1306 Query 1273 GAAGGATTTGATCGAATCCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCG 1332 ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1307 GAAGGGTTTGATCGGATCCACATTGTCGATTTCGATATCGGTTATGGAGGTCAATGGGCG 1366 Query 1333 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCGTCAGCTCCGTCGCTAAAG 1392 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1367 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCATCAGCTCCGTCGCTAAAG 1426 Query 1393 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1427 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1486 Query 1453 GAAAATCTCAGAAGTTTCGCTGGAGAAACCGGAGTCTCCTTCGAAATCGAGCTCTTGAAC 1512 |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| ||| Sbjct 1487 GAAAATCTCAGAAGCTTCGCCGGCGAAACAGGTGTCTCCTTCGAAATCGAGCTCTTAAAC 1546 Query 1513 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGAGAAA 1572 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 1547 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTGTCTTTATTCCGATCATCGGAGAAA 1606 Query 1573 GAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATTGATA 1632 |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1607 GAAGCAATCGCTGTGAATCTCCCAATCAGCTCCATGGTCTCCGGTTACCTCCCATTGATA 1666 Query 1633 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTGCGAC 1692 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1667 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAAGCTGCGAC 1726 Query 1693 CGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACACATCT 1752 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1727 CGTAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTTCAGTACTACACATCT 1786 Query 1753 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTATTGAG 1812 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1787 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTACGAGTATTGAG 1846 Query 1813 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGCAG 1872 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1847 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGGAG 1906 Query 1873 AGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACGCTGAGT 1932 ||||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||| Sbjct 1907 AGATCACCGCCGTGGAGAAGCTTATTTGGGCAATGTGGGTTTACTCCTGTGACGCTGAGT 1966 Query 1933 CAGACGGCGGAGACACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAGGGTTTCAC 1992 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1967 CAGACGGCGGAGACACAAGCGGAGTATTTGTTGCAGAGGAATCCAATGAGAGGGTTTCAC 2026 Query 1993 TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2052 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 2027 TTGGAGAAGAGACAGTCTTCGTCGCCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2086 Query 2053 GTTACTGTCTCAGCTTGGAAATGTTGAGAGGAAAAATTATGATATTT-CAGGGTTCAATT 2111 ||||||||||||||||||||||||| ||| |||||| | ||||||| || |||| |||| Sbjct 2087 GTTACTGTCTCAGCTTGGAAATGTTAAGACGAAAAAGGAGGATATTTTCACGGTTTAATT 2146 Query 2112 TTCTTTTCT-TAGCTTTTTAATTTGGGTTATATCATGTTTTAATATGTTTGATTGTGATG 2170 ||||||| | |||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 2147 TTCTTTT-TGTAGCTTTTCAATTTGGGTTAGATCACGTTTTAATATGTTTGATTGTGATG 2205 Query 2171 TTAACCAATCAAATGATATATATAT 2195 ||||||||||||||||||||||||| Sbjct 2206 TTAACCAATCAAATGATATATATAT 2230 Score = 327 bits (177), Expect = 2e-88 Identities = 192/199 (96%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1 AAAAGAGAGCATTTTTGATGAAGATCATCACTTTGGAATGTTGTTGCAATCATCCAGAGT 60 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 AAAAGAGAGCATTTTTTATGAAGATCATCACTTTGGAATGTTGTTGGAATCATCCAGAGT 60 Query 61 CAATATACATAAGC-ACAGTGAAGAAAGATTGTTATTAACAACGAGTGTGAGATAATGTG 119 |||||||||||||| || | ||||||||||||||||||| | |||||||||||||||||| Sbjct 61 CAATATACATAAGCAAC-GAGAAGAAAGATTGTTATTAATACCGAGTGTGAGATAATGTG 119 Query 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179 Query 180 GGTTTTTCTGGGTTTCTTT 198 ||||||||||||||||||| Sbjct 180 GGTTTTTCTGGGTTTCTTT 198 > AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family transcription factor | chr2:18617862-18620150 REVERSE LENGTH=2289 Length=2289 Score = 573 bits (310), Expect = 2e-162 Identities = 868/1122 (77%), Gaps = 99/1122 (9%) Strand=Plus/Plus Query 1001 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACAACCTTAACAACAACGACACTA 1060 |||||||||||||||||||||||||||||||||||||| | || |||| | | | | || Sbjct 987 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCATCTCAACA-CTA-GT-AGTA 1043 Query 1061 ACAACAATCCTAAACCTCCGTTTCGTAGAGCAGCTTCGT-ATATAACCGAAGCTCTTCAC 1119 || |||| | | |||||||| ||||||||||| | | || | |||||||| | | Sbjct 1044 ACCACAAG--T---C-TCCGTTTCAAAGAGCAGCTTC-TCACATCGCTGAAGCTCT-C-C 1094 Query 1120 TCTCTTCTTCAAGACTCATC-A-TCATCACCACCGTCTCTCTCACCTCCTCAAAACCTAA 1177 |||| || || | || | | ||||||||||||| | |||| || | || || | Sbjct 1095 TCTCA-CT-CATC-CACAACGAATCATCACCACCGT-TAA-TCACG-CCGGAGAATCTGA 1148 Query 1178 TCTTTC-GAATCGCAGCTTACAGAGCTTTCTCGGAAACGTCACCGTTTCTTCAATTCGTC 1236 | | || ||||||| ||||||||| | ||||| ||||| || |||||||| |||||||| Sbjct 1149 T-TCTCCGAATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTT 1207 Query 1237 AATTTCACAGCAAACCAGA-CGATTCTTGAGTCCTTC---GAA---GGATTTGATCGAAT 1289 || |||||||| || || | ||||||||||||||| | ||| || |||||||| || Sbjct 1208 AACTTCACAGCGAATCA-ATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGGAT 1266 Query 1290 CCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCGTCTCTGATTCAAGAGCT 1349 ||||||| |||||||||| | || || ||||| |||||| ||||||| || ||||| || Sbjct 1267 CCACATTATCGATTTCGACGTTGGATATGGAGGACAATGGTCGTCTCTAATGCAAGAACT 1326 Query 1350 CGC--C-GGAA----A--AAGAA-ACAGAT-CTTCGTCAGCTCCGTCGCTAAAGATTA-C 1397 ||| | ||| | ||||| | ||| | | || || ||| || || |||| | Sbjct 1327 CGCTTCCGGAGTTGGAGGAAGAAGA-AGAAACAGAG-CA--TC-GTCTCTGAA-ATTAAC 1380 Query 1398 AG-CTTTCGCTTCTCC---TTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAAG 1453 || |||| ||| |||| ||| || ||||||||||| |||||||| || ||||| || | Sbjct 1381 AGTCTTT-GCTCCTCCACCTTCTACAGTCTCCGACGAGTTCGAGCTTCGTTTCACAGAGG 1439 Query 1454 AAAATCTCAGAAGTTTCGCTGGAGAAACCG-GAGTCTCCTT-CGAAATCGAGCT-CTTGA 1510 ||||||||| || ||||| |||||| | || | ||||| |||||||||| | || | Sbjct 1440 AAAATCTCAAAACATTCGCCGGAGAAGTCAAGA-T-TCCTTTCGAAATCGAGTTACT--A 1495 Query 1511 A-CATGGAGATTCT-CTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGA 1568 | | | ||| |||| || || ||| ||||||||||||||||| ||| | |||||||| Sbjct 1496 AGCGTAGAGCTTCTTCTA-AACCCAGCTTATTGGCCACTCTCTCTAC---GTTCATCGGA 1551 Query 1569 GAAAGAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATT 1628 ||||||||||| || |||||||||||| | | |||| | | |||||||||||| || || Sbjct 1552 AAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCCTCCGGTTACCTTCCGTT 1611 Query 1629 GATACTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTG 1688 || || || ||||| || ||| | ||||||||| |||||||||||||||| ||| | || Sbjct 1612 AATCCTCCGATTCCTTAAACAACTATCACCAAACATCGTCGTTTGCTCAGACAGAGGATG 1671 Query 1689 CGACCGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACAC 1748 ||||| ||| ||||||||||| || |||| |||||| | |||| || ||| |||| Sbjct 1672 TGACCGTAAC---GACGCGCCGTTTCCAAACGCAGTGATTCATTCGCTTCAATACCACAC 1728 Query 1749 ATCTCTGCTCGAGTCTCTCGACT-CTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTA 1807 |||||||| |||||||| || | || |||| ||| | | | | | | |||||||| Sbjct 1729 TTCTCTGCTTGAGTCTCTTGA-TGCT---AATCAGAACCA-G-G-A--C-GATTCGAGTA 1778 Query 1808 TTGAGAGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGA 1867 | ||||||||||| || ||||| |||||| |||| ||||||| ||| || ||||||||| Sbjct 1779 TCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGTTGGA 1838 Query 1868 T-GCAGAGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACG 1926 | | | ||||| || |||||||||| ||||||| ||||||||||||||||||| || | Sbjct 1839 TTGAA-AGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCGA-G 1896 Query 1927 CT-GAGTCAGACGGCGGA-GACACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAG 1984 | |||||||| |||||| | | |||||||||| |||||||||||| |||||| |||||| Sbjct 1897 TTTGAGTCAGATGGCGGAAG-CTCAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGAG 1955 Query 1985 GGTTTCAC-TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGG 2043 |||||||| ||| |||| || | || ||| | | |||||||| |||||||||| ||| Sbjct 1956 GGTTTCACGTTG-AGAAAAG---G-CA--GTC-T-T-CACTTGTCATGTGTTGGCAAAGG 2005 Query 2044 AAAGAACTTGTTACTGTCTCAGCTTGGAAATGTTGAGAGGAA 2085 |||||||||||||||||||| ||||||||||||| ||| ||| Sbjct 2006 AAAGAACTTGTTACTGTCTCTGCTTGGAAATGTT-AGACGAA 2046 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108884982105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5